1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttgttcctttctaaagaaatgtcatttgtttttttatcaagcaggccaatcatttgattgtgatataaatgggaatttatattgcttttatttctttcagCGATCGTTTCCTGCCTGACAAAGCCATTGACTTGATTGATGAAGCTGGATCTCGTGTTAGGCTGAGGCATGCGCAG
species | Zea mays |
transcript | GRMZM2G001084_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAGATGATGCTTTAATTGCTGCTGCACAGCTGTCTTATCAGTATATCAG CGATCGTTTCCTGCCTGACAAAGCCATTGACTTGATTGATGAAGCTGGATCEST: gi|211161957|gb|FL101570.1|FL101570
genomic: ACAGATGATGCTTTAATTGCTGCTGCACAGCTGTCTTATCAGTATATCAGgtttgcaaat ... tttctttcagCGATCGTTTCCTGCCTGACAAAGCCATTGACTTGATTGATGAAGCTGGATC
EST: ACAGATGATGCTTTAATTGCTGCTGCACAGCTGTCTTATCAGTATATCAG CGATCGTTTCCTGCCTGACAAAGCCATTGACTTGATTGATGAAGCTGGATC
genomic: ACAGATGATGCTTTAATTGCTGCTGCACAGCTGTCTTATCAGTATATCAGgtttgcaaat ... tttctttcagCGATCGTTTCCTGCCTGACAAAGCCATTGACTTGATTGATGAAGCTGGATC
ccaatcatttgattgtgatataaatgggaatttatattgcttttatttctttcagCGATCGTTTCCTGCCTGACAAAGCCATTGACTTGATTGATGAAGCTGGATCTCGTGTTAGGCTGAGGCATGCGCAG
atttgat putative branch site (score: 171)
ttgcttttatttcttt putative PPT
aatttatattgctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttcctttctaaagaaatgtcatttgtttttttatcaagcaggccaatcatttgattgtgatataaatgggaatttatattgcttttatttctttcagCGATCGTTTCCTGCCTGACAAAGCCATTGACTTGATTGATGAAGCTGGATCTCGTGTTAGGCTGAGGCATGCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
-tgttcct
- - - - - - aaagaaa
- - - - - - - - - - - - - tgttttt
- - - - - - - - - - - - - - - - - - - - gcaggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttgattg