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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaagcttctcagataactaatgtgaaagtgtcttgcatttaaaaaaaaaaggaatttcacttttgcagGTTTTTTGACCGAGATATTGAATGCATCTACAAGTTCTTTAACAAAAG

Basic information

species Zea mays
transcript AC207309.3_FGT005
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC207309.3_FGT005 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g66520.1 (Oryza sativa), 3'ss of exon 8
gtatgaagctt-ctcagataactaatgtgaaagtgtcttgcatttaaaaaaaaaaggaatttcacttttgcagGTTTTTTGACCGAGATATTGAATGCATCTACAAGTTCTTTAACAAAAG
|||||   | |  ||   ||  |||    ||     | |   | |  |  |   | || ||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||  || ||
gtatgtgacatattctagtagttaagagaaagactacctttgtattcattattcatgagttttacttttgcagGTTTTTTGATCGAGATATTGAATGCATCTACAAATTCTTTAGGAAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taactaatgtgaaagtgtcttgcatttaaaaaaaaaaggaatttcacttttgcagGTTTTTTGACCGAGATATTGAATGCATCTACAAGTTCTTTAACAAAAG
 aactaat  putative branch site (score: 2)
                                         tttcactttt  putative PPT
                       atttaaaaaaaaaagg  TA-rich tract