1 5' 3' | 2 5' 3' | 3 5' 3' |
...aacaggggctgcgctcagacttgtcaccctgcatgccgcatgtactgtactgtacaagcacgcccgaaataacatgggttatatttacattacatggcagATTGGCGAGAGCTACCCGTTCTTCCGGAGCAGCTACTACATGTCGATCCTGGACGAGGAGAGCGACAGCATCCGCGCCTTCGCGGCGTACAAGGAGGCGA
species | Zea mays |
transcript | AC204611.4_FGT001 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGAGTACCTCGTCCTCTTCGCGCCCACGCCGAGGGACGCCATGATGCTG ATTGGCGAGAGCTACCCGTTCTTCCGGAGCAGCTACTACATGTCGATCCTGEST: gi|32850440|gb|CD990121.1|CD990121
genomic: ACGAGTACCTCGTCCTCTTCGCGCCCACGCCGAGGGACGCCATGATGCTGgtaggcagag ... tacatggcagATTGGCGAGAGCTACCCGTTCTTCCGGAGCAGCTACTACATGTCGATCCTG
EST: ACCTCGTCCTCTTCGCGCCCACGCCGAGGGCACGCCATGATGCTG ATTGGCGAGAGCTACCCGTTCTTCCGGAGCAGCTACTACATGTCGATCCTGEST: gi|78109699|gb|DV528115.1|DV528115
genomic: ACCTCGTCCTCTTCGCGCCCACGCCGAGGG-ACGCCATGATGCTGgtaggcagag ... tacatggcagATTGGCGAGAGCTACCCGTTCTTCCGGAGCAGCTACTACATGTCGATCCTG
EST: ACGAGTACCTCGTCCTCTTCGCGCCCACGCCGAGGGACGCCATGATGCTG ATTGGCGAGAGCTACCCGTTCTTCCGGAGCAGCTACTACATGTCGATCCTG
genomic: ACGAGTACCTCGTCCTCTTCGCGCCCACGCCGAGGGACGCCATGATGCTGgtaggcagag ... tacatggcagATTGGCGAGAGCTACCCGTTCTTCCGGAGCAGCTACTACATGTCGATCCTG
tgtactgtacaagcacgcccgaaataacatgggttatatttacattacatggcagATTGGCGAGAGCTACCCGTTCTTCCGGAGCAGCTACTACATGTCGATCCTGGACGAGGAGAGCGACAGCATCCGCGCCTTCGCGGCGTACAAGGAGGCGA
aaataac putative branch site (score: 3)
ttatatttacattaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaggggctgcgctcagacttgtcaccctgcatgccgcatgtactgtactgtacaagcacgcccgaaataacatgggttatatttacattacatggcagATTGGCGAGAGCTACCCGTTCTTCCGGAGCAGCTACTACATGTCGATCCTGGACGAGGAGAGCGACAGCATCCGCGCCTTCGCGGCGTACAAGGAGGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - -gggctgc
- - - - - - - - - - - - - - -tgcatgc
- - - - - - - - - - - - - - - - - - -gcatgta
- - - - - - - - - - - - - - - - - - - - tgtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - caagcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaca