1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagacggcacgtaagatagtacctttttctgctacattttttagttaggacaaggtaagtgctaactgttgtttgttttttggctgattcagGTTACTAGGGCAGATTACTTGAGTGGTCGAACAGCACTGCATTTTGCTGCACATGATGGATTTGTTCGGTGTATTAGGCTTTTAGTTGCAGACTTTGTCC
species | Zea mays |
transcript | AC194389.3_FGT001 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCATGGGCACTGGGAGGTGGTGCAGATGCTTCTTCTATTTAGATGCAAT GTTACTAGGGCAGATTACTTGAGTGGTCGAACAGCACTGCATTTTGCTGCAEST: gi|149014811|gb|EE044512.2|EE044512
genomic: GGCATGGGCACTGGGAGGTGGTGCAGATGCTTCTTCTATTTAGATGCAATgtaagacggc ... gctgattcagGTTACTAGGGCAGATTACTTGAGTGGTCGAACAGCACTGCATTTTGCTGCA
EST: GGCATGGGCACTGGGAGGTGGTGCAGATGCTTCTTCTATTTAGATGCAAT GTTACTAGGGCAGATTACTTGAGTGGTCGAACAGCACTGCATTTTGCTGCAEST: gi|148961455|gb|EE012203.2|EE012203
genomic: GGCATGGGCACTGGGAGGTGGTGCAGATGCTTCTTCTATTTAGATGCAATgtaagacggc ... gctgattcagGTTACTAGGGCAGATTACTTGAGTGGTCGAACAGCACTGCATTTTGCTGCA
EST: GGCATGGGCACTGGGAGGTGGTGCAGATGCTTCTTCTATTTAGATGCAAT GTTACTAGGGCAGATTACTTGAGTGGTCGAACAGCACTGCATTTTGCTGCAEST: gi|211432410|gb|FL439403.1|FL439403
genomic: GGCATGGGCACTGGGAGGTGGTGCAGATGCTTCTTCTATTTAGATGCAATgtaagacggc ... gctgattcagGTTACTAGGGCAGATTACTTGAGTGGTCGAACAGCACTGCATTTTGCTGCA
EST: GGCATGGGCACTGGGAGGTGGTGCAGATGCTTCTTCTATTTAGATGCAAT GTTACTAGGGCAGATTACTTGAGTGGTCGAACAGCACTGCATTTTGCTGCAEST: gi|211065139|gb|FL368215.1|FL368215
genomic: GGCATGGGCACTGGGAGGTGGTGCAGATGCTTCTTCTATTTAGATGCAATgtaagacggc ... gctgattcagGTTACTAGGGCAGATTACTTGAGTGGTCGAACAGCACTGCATTTTGCTGCA
EST: GGCATGGGCACTGGGAGGTGGTGCAGATGCTTCTTCTATTTAGATGCAAT GTTACTAGGGCAGATTACTTGAGTGGTCGAACAGCACTGCATTTTGCTGCAEST: gi|148942318|gb|EC887337.2|EC887337
genomic: GGCATGGGCACTGGGAGGTGGTGCAGATGCTTCTTCTATTTAGATGCAATgtaagacggc ... gctgattcagGTTACTAGGGCAGATTACTTGAGTGGTCGAACAGCACTGCATTTTGCTGCA
EST: GGCATGGGCACTGGGAGGTGGTGCAGATGCTTCTTCTATTTAGATGCAAT GTTACTAGGGCAGATTACTTGAGTGGTCGAACAGCACTGCATTTTGCTGCAEST: gi|211243066|gb|FL400453.1|FL400453
genomic: GGCATGGGCACTGGGAGGTGGTGCAGATGCTTCTTCTATTTAGATGCAATgtaagacggc ... gctgattcagGTTACTAGGGCAGATTACTTGAGTGGTCGAACAGCACTGCATTTTGCTGCA
EST: GGCATGGGCACTGGGAGGTGGTGCAGATGCTTCTTCTATTTAGATGCAAT GTTACTAGGGCAGATTACTTGAGTGGTCGAACAGCACTGCATTTTGCTGCAEST: gi|74238026|gb|DT645940.1|DT645940
genomic: GGCATGGGCACTGGGAGGTGGTGCAGATGCTTCTTCTATTTAGATGCAATgtaagacggc ... gctgattcagGTTACTAGGGCAGATTACTTGAGTGGTCGAACAGCACTGCATTTTGCTGCA
EST: GGCATGGGCACTGGGAGGTGGTGCAGATGCTTCTTCTATTTAGATGCAAT GTTACTAGGGCAGATTACTTGAGTGGTCGAACAGCACTGCATTTTGCTGCA
genomic: GGCATGGGCACTGGGAGGTGGTGCAGATGCTTCTTCTATTTAGATGCAATgtaagacggc ... gctgattcagGTTACTAGGGCAGATTACTTGAGTGGTCGAACAGCACTGCATTTTGCTGCA
tttttagttaggacaaggtaagtgctaactgttgtttgttttttggctgattcagGTTACTAGGGCAGATTACTTGAGTGGTCGAACAGCACTGCATTTTGCTGCACATGATGGATTTGTTCGGTGTATTAGGCTTTTAGTTGCAGACTTTGTCC
tttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacggcacgtaagatagtacctttttctgctacattttttagttaggacaaggtaagtgctaactgttgtttgttttttggctgattcagGTTACTAGGGCAGATTACTTGAGTGGTCGAACAGCACTGCATTTTGCTGCACATGATGGATTTGTTCGGTGTATTAGGCTTTTAGTTGCAGACTTTGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA