1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctgcatgggggataggaattatatttttgttcattctacagtttttatctgtatcaaatagtctgttgattggttgcaattgttttgatgatggatcaagACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGAGGTGGTGCAGATGCTTCTTCTATTTAGATGCAAT
species | Zea mays |
transcript | AC194389.3_FGT001 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCTGCTGGAGAAAGGCGCTGACGTTAACGCGCGCAACTACTGCGGCCAG ACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGAGGTGGTGCAGATGEST: gi|149014811|gb|EE044512.2|EE044512
genomic: TGCTGCTGGAGAAAGGCGCTGACGTTAACGCGCGCAACTACTGCGGCCAGgtagtagatc ... atggatcaagACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGAGGTGGTGCAGATG
EST: TGCTGCTGGAGAAAGGCGCTGACGTTAACGCGCGCAACTACTGCGGCCAG ACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGAGGTGGTGCAGATGEST: gi|211516107|gb|FL391741.1|FL391741
genomic: TGCTGCTGGAGAAAGGCGCTGACGTTAACGCGCGCAACTACTGCGGCCAGgtagtagatc ... atggatcaagACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGAGGTGGTGCAGATG
EST: TGCTGCTGGAGAAAGGNGCTGACGTTAACGCGCGCAACTACTGCGGNCAG ACTGCGCTGATGGATGCTTGTCGGCATGGGCACTGGGAEST: gi|148961455|gb|EE012203.2|EE012203
genomic: TGCTGCTGGAGAAAGGCGCTGACGTTAACGCGCGCAACTACTGCGGCCAGgtagtagatc ... atggatcaagACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGA
EST: TGCTGCTGGAGAAAGGCGCTGACGTTAACGCGCGCAACTACTGCGGCCAG ACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGAGGTGGTGCAGATGEST: gi|211432410|gb|FL439403.1|FL439403
genomic: TGCTGCTGGAGAAAGGCGCTGACGTTAACGCGCGCAACTACTGCGGCCAGgtagtagatc ... atggatcaagACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGAGGTGGTGCAGATG
EST: GCTGCTGGAGAAAGGCGCTGACGTTAACGCGCGCAACTACTGCGGNCCAG ACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGAGGTGGTGCAGATEST: gi|211065139|gb|FL368215.1|FL368215
genomic: GCTGCTGGAGAAAGGCGCTGACGTTAACGCGCGCAACTACTGCGG-CCAGgtagtagatc ... atggatcaagACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGAGGTGGTGCAGAT
EST: TGCTGCTGGAGAAAGGCGCTGACGTTAACGCGCGCAACTACTGCGGCCAG ACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGAGGTGGTGCAGATGEST: gi|148942318|gb|EC887337.2|EC887337
genomic: TGCTGCTGGAGAAAGGCGCTGACGTTAACGCGCGCAACTACTGCGGCCAGgtagtagatc ... atggatcaagACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGAGGTGGTGCAGATG
EST: TGCTGCTGGAGAAAGGCGCTGACGTTAACGCGCGCAACTACTGCGGCCAG ACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGAGGTGGTGCAGATGEST: gi|211243066|gb|FL400453.1|FL400453
genomic: TGCTGCTGGAGAAAGGCGCTGACGTTAACGCGCGCAACTACTGCGGCCAGgtagtagatc ... atggatcaagACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGAGGTGGTGCAGATG
EST: TGCTGCTGGAGAAAGGCGCTGACGTTAACGCGCGCAACTACTGCGGCCAG ACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGAGGTGGTGCAGATGEST: gi|211516673|gb|FL422113.1|FL422113
genomic: TGCTGCTGGAGAAAGGCGCTGACGTTAACGCGCGCAACTACTGCGGCCAGgtagtagatc ... atggatcaagACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGAGGTGGTGCAGATG
EST: TGCTGCTGGAGAAAGGCGCTGACGTTNACGCGCGCAACTACTGCGGCCAG ACTGCGCTGATGCATGCTTGTCGGCATGGGCEST: gi|74238026|gb|DT645940.1|DT645940
genomic: TGCTGCTGGAGAAAGGCGCTGACGTTAACGCGCGCAACTACTGCGGCCAGgtagtagatc ... atggatcaagACTGCGCTGATGCATGCTTGTCGGCATGGGC
EST: TGCTGCTGGAGAAAGGCGCTGACGTTAACGCGCGCAACTACTGCGGCCAG ACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGAGGTGGTGCAGATG
genomic: TGCTGCTGGAGAAAGGCGCTGACGTTAACGCGCGCAACTACTGCGGCCAGgtagtagatc ... atggatcaagACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGAGGTGGTGCAGATG
tatctgtatcaaatagtctgttgattggttgcaattgttttgatgatggatcaagACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGAGGTGGTGCAGATGCTTCTTCTATTTAGATGCAAT
ttttgat putative branch site (score: 42)
tatcaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcatgggggataggaattatatttttgttcattctacagtttttatctgtatcaaatagtctgttgattggttgcaattgttttgatgatggatcaagACTGCGCTGATGCATGCTTGTCGGCATGGGCACTGGGAGGTGGTGCAGATGCTTCTTCTATTTAGATGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
-tgcatgg
- - - - - - - - - - - - ttttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg