1 5' 3' | 2 5' 3' | 3 5' 3' |
...acctagtgttatgcggaacacattattgggtcactgttttcatacgcataccgagaaaagtcacaaagaaatttttgatcttttcctcccatttcttcagGCATGTTTGTTATTCCTTTACTTGACTGTCCTCATCTAGGAAACATTGTAAATATGATAGGTCAGTTATCTGTATGCAGTCACTTGAAGCGCTACAAGAC
species | Zea mays |
transcript | AC190985.3_FGT006 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
gcataccgagaaaagtcacaaagaaatttttgatcttttcctcccatttcttcagGCATGTTTGTTATTCCTTTACTTGACTGTCCTCATCTAGGAAACATTGTAAATATGATAGGTCAGTTATCTGTATGCAGTCACTTGAAGCGCTACAAGAC
ttttgat putative branch site (score: 4)
tttttgatcttttcct CT-rich tract
aaatttttgatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctagtgttatgcggaacacattattgggtcactgttttcatacgcataccgagaaaagtcacaaagaaatttttgatcttttcctcccatttcttcagGCATGTTTGTTATTCCTTTACTTGACTGTCCTCATCTAGGAAACATTGTAAATATGATAGGTCAGTTATCTGTATGCAGTCACTTGAAGCGCTACAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - -gaacaca
- - - - - - - - - - - - - - - - actgttt
- - - - - - - - - - - - - - - - - - - - - - -gcatacc
- - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa