Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttaaaacatggttcactgcatatgtattctataaatatcatgcctgctaatttgttgacttgattgtttcagCCTTGGATTTCTTGAGGCTCCAGCTTTTGAAGATGGAATTCTGGAAAAGTACCCATTCCTGAATATTGTACTTAACCATGTCAGTGATGACACATCTGAT

Basic information

species Zea mays
transcript AC190985.3_FGT006
intron # 2
splice site 3'
intron type U2

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 11

CTTTTTGGAAGCGGAAGTCCTTCCATCTACTTCAGAACATTCGAGACCTAGGGTGCAGCTCAAAAGAGCCGATGTATGGCTTGGATTTAAATCACTGTATgtaagtttaa ... attgtttcagCCTTGGATTTCTTGAGGCTCCAGCTTTTGAAGATGGAATTCTGGAAAAGTACCCATTCCTGAATATTGTACTTAACCATGTCAGTGATGACACATCTGAT


Block sizes: 49 (upstream exon), 21 (downstream exon)
Score: 3

CTTTTTGGAAGCGGAAGTCCTTCCATCTACTTCAGAACATTCGAGACCTAGGGTGCAGCTCAAAAGAGCCGATGTATGGCTTGGATTTAAATCACTGTATgtaagtttaa ... attgtttcagCCTTGGATTTCTTGAGGCTCCAGCTTTTGAAGATGGAATTCTGGAAAAGTACCCATTCCTGAATATTGTACTTAACCATGTCAGTGATGACACATCTGAT


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 3

CTTTTTGGAAGCGGAAGTCCTTCCATCTACTTCAGAACATTCGAGACCTAGGGTGCAGCTCAAAAGAGCCGATGTATGGCTTGGATTTAAATCACTGTATgtaagtttaa ... attgtttcagCCTTGGATTTCTTGAGGCTCCAGCTTTTGAAGATGGAATTCTGGAAAAGTACCCATTCCTGAATATTGTACTTAACCATGTCAGTGATGACACATCTGAT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatatgtattctataaatatcatgcctgctaatttgttgacttgattgtttcagCCTTGGATTTCTTGAGGCTCCAGCTTTTGAAGATGGAATTCTGGAAAAGTACCCATTCCTGAATATTGTACTTAACCATGTCAGTGATGACACATCTGAT
                                              ttgtttc  CT-rich tract
       tattctataaatatca  TA-rich tract