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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagagaccatatgatatattgtaaactttgattggctgaattgtatttgtttttccactttattaaccccataaattttatgttatcctgataccttgctataaactaaggtttcctcttcttatcttttcccttaacag

Basic information

species Vitis vinifera
transcript Vv19s0090g01590.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g01590.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G02050.1 (Glycine max), 5'ss of exon 2
GTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagagaccatatgatatattgtaaactttgattggctgaattgtatttgtttttccactttattaaccccataaatt-ttatgttatcctgataccttgctataaactaaggtttcctcttcttatcttttcccttaacag
||   || ||| ||||||| ||||| |||||||||||||||| ||| || ||||||| ||| ||||||        |||     || | |    ||||  ||  |    |||| ||   ||  | ||||  ||     ||||  |  |||| || | ||   |  | | |   || |||  ||     |  |||| |  |          
GTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAGGATCTTATGCAAAGgta--------cattgagaatctcgctgccttttttt--cctgcttgttttacattggctacttggtt-----catatgtcattattttttgcttcaatttagtttgtaagtaattttgtagttctttatgtcattag-------

upper sequence: Vv19s0090g01590.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G09940.1 (Glycine max), 5'ss of exon 2
GTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatg--agagaccatatgatatattgtaaactttgattggctgaattgtatttgtttttccactttattaaccccataaattttatgttatcctgataccttgctataaactaaggtttcctcttcttatcttttcccttaacag
||   || ||| ||||||| |||||||||||||||||||||  ||| || ||||||  ||| |||||||   ||||| ||      || ||||  | |||              |    |  |||  |||||   |||   |||  | ||     ||    || | ||  ||          | | |  || || ||||     | |  ||
GTGCTGGATTGATTAAGAAGAAAGGCTTTAAAGGATCCTTTATAGAAGCAGGATCTAATGCTAAGgtataccagagatca------atgttgtttattttc-------------tgcccggctttttactttgcaaacttaatacctatttgaacatgtccattcattaata---------atcttcattttttgtcttcgttttcattag

upper sequence: Vv19s0090g01590.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G10010.1 (Glycine max), 5'ss of exon 1
-------------------------GTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagagaccatatgatatattgtaaactttgattggctgaattgtatttgtttttccactttattaaccccataaattttatgttatcctgataccttgctataaactaaggtttcctcttcttatcttttcccttaacag
                         ||   || ||| ||||||| |||||||||||||||||||||  ||| || ||||||  ||| |||||||   |||               | ||| ||| ||   |    | | |  |  |||  |||||   |||   |||    |||| ||   | | | | ||   || ||  |   | | |  || || |||| |   | |  ||
ATGCTTTCAATGGGTCTGTTTTCAGGTGCTGGATTGATTAAGAAGAAAGGCTTTAAAGGATCCTTTATAGAAGCAGGATCTAATGCTAAGgtataccagag-------------atcaacgttgtttattt----tctgtccggctttttactttgcaaacttaata---cttat-ttgagcaggtccatt--cattaataa---tcttcattttttgtcttctttttcattag

upper sequence: Vv19s0090g01590.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA0121S00230.1 (Glycine max), 5'ss of exon 1
--------------------------GTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatg--agagaccatatgatatattgtaaactttgattggctgaattgtatttgtttttccactttattaaccccataaattttatgttatcctgataccttgctataaactaaggtttcctcttcttatcttttcccttaacag
                          ||   || ||| ||||||| |||||||||||||||||||||  ||| || ||||||  ||| |||||||   ||||| ||      || ||||  | |||              |    |  |||  |||||   |||   |||  | ||     ||    || | ||  ||          | | |  || || ||||     | |  ||
GATGCTTTCAATGGGTCTGTTTTCAGGTGCTGGATTGATTAAGAAGAAAGGCTTTAAAGGATCCTTTATAGAAGCAGGATCTAATGCTAAGgtataccagagatca------atgttgtttattttc-------------tgcccggctttttactttgcaaacttaatacctatttgaacatgtccattcattaata---------atcttcattttttgtcttcgttttcattag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26262978|gb|CA814041.1|CA814041
EST:     AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAG                         ACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
genomic: AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagaga ... cccttaacagACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
EST: gi|71875197|gb|DT024252.1|DT024252
EST:     AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAG                         ACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
genomic: AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagaga ... cccttaacagACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
EST: gi|34549393|gb|CF517625.1|CF517625
EST:     AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAG                         ACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
genomic: AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagaga ... cccttaacagACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
EST: gi|71876494|gb|DT025549.1|DT025549
EST:     AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAG                         ACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
genomic: AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagaga ... cccttaacagACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
EST: gi|51050247|gb|CO818453.1|CO818453
EST:     TTAAAGGATCC-TTGCAGAGGCCGGATC-TCTGCCAAG                         ACATTTGCAATTTTGTNNGGANTTCACAGTTTGGTTGTCTGTTTTCTGAAG
genomic: TTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagaga ... cccttaacagACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
EST: gi|28961283|gb|CB340652.1|CB340652
EST:     AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAG                         ACATTTGCAACTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
genomic: AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagaga ... cccttaacagACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
EST: gi|28961109|gb|CB340563.1|CB340563
EST:     AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAG                         ACATTTGCAACTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
genomic: AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagaga ... cccttaacagACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
EST: gi|351041236|gb|FQ444213.1|FQ444213
EST:     AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAG                         ACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
genomic: AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagaga ... cccttaacagACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
EST: gi|110720822|gb|EE097079.1|EE097079
EST:     AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAG                         ACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
genomic: AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagaga ... cccttaacagACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
EST: gi|351023175|gb|FQ432558.1|FQ432558
EST:     AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAG                         ACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
genomic: AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagaga ... cccttaacagACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
EST: gi|26266858|gb|CA817921.1|CA817921
EST:     AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAG                         ACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
genomic: AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagaga ... cccttaacagACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
EST: gi|351029437|gb|FQ436831.1|FQ436831
EST:     AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAG                         ACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
genomic: AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagaga ... cccttaacagACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
EST: gi|71867379|gb|DT016434.1|DT016434
EST:     AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAG                         ACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
genomic: AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagaga ... cccttaacagACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
EST: gi|26262072|gb|CA813135.1|CA813135
EST:     AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAG                         ACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
genomic: AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagaga ... cccttaacagACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
EST: gi|33408488|gb|CF214115.1|CF214115
EST:     AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAG                         ACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
genomic: AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagaga ... cccttaacagACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
EST: gi|26261889|gb|CA812952.1|CA812952
EST:     AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAG                         ACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
genomic: AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagaga ... cccttaacagACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
EST: gi|34549479|gb|CF517711.1|CF517711
EST:     AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAG                         ACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
genomic: AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagaga ... cccttaacagACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
EST: gi|33410548|gb|CF216175.1|CF216175
EST:     AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAG                         ACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
genomic: AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagaga ... cccttaacagACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
EST: gi|351023375|gb|FQ432758.1|FQ432758
EST:     AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAG                         ACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG
genomic: AGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCGGATCTTCTGCCAAGgtatgagaga ... cccttaacagACATTTGCAATTTTGTCTGGAGTTCACAGTTTGGTTGTCTGTTTTCTGAAG