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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTGAAAGCTAACCTTTCCGGTCCTCCTATAGTATGCCTTCTCAGGTTCGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctctctcttgtaatttttttatgaatgtgctttgtgtttgcattttttttattctctggtttttcatattagttgattttgcttgttaatatt...

Basic information

species Vitis vinifera
transcript Vv19s0090g01590.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26262978|gb|CA814041.1|CA814041
EST:     CGCCGCCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACG                         GTTCAGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
genomic: CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctc ... catgtttcagGTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
EST: gi|71875197|gb|DT024252.1|DT024252
EST:     CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACG                         GTTCGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
genomic: CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctc ... catgtttcagGTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
EST: gi|34549393|gb|CF517625.1|CF517625
EST:     CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACG                         GTTCAGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
genomic: CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctc ... catgtttcagGTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
EST: gi|71876494|gb|DT025549.1|DT025549
EST:     CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACG                         GTTCGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
genomic: CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctc ... catgtttcagGTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
EST: gi|28961283|gb|CB340652.1|CB340652
EST:     CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACG                         GTTCAGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
genomic: CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctc ... catgtttcagGTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
EST: gi|28961109|gb|CB340563.1|CB340563
EST:     CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACG                         GTTCAGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
genomic: CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctc ... catgtttcagGTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
EST: gi|351041236|gb|FQ444213.1|FQ444213
EST:     CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACG                         GTTCGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
genomic: CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctc ... catgtttcagGTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
EST: gi|110720822|gb|EE097079.1|EE097079
EST:     CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACG                         GTTCGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
genomic: CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctc ... catgtttcagGTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
EST: gi|351023175|gb|FQ432558.1|FQ432558
EST:     CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACG                         GTTCGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
genomic: CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctc ... catgtttcagGTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
EST: gi|26266858|gb|CA817921.1|CA817921
EST:     CGCTTTCATGGGCTCCATTTTCGCCTACG                         GTTCAGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCC
genomic: CGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctc ... catgtttcagGTT-TGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCC
EST: gi|351029437|gb|FQ436831.1|FQ436831
EST:     CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACG                         GTTCGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
genomic: CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctc ... catgtttcagGTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
EST: gi|71867379|gb|DT016434.1|DT016434
EST:     CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACG                         GTTCAGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
genomic: CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctc ... catgtttcagGTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
EST: gi|26262072|gb|CA813135.1|CA813135
EST:     CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACG                         GTTCAGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
genomic: CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctc ... catgtttcagGTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
EST: gi|33408488|gb|CF214115.1|CF214115
EST:     CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACG                         GTTCAGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
genomic: CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctc ... catgtttcagGTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
EST: gi|26261889|gb|CA812952.1|CA812952
EST:     CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACG                         GTTCAGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
genomic: CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctc ... catgtttcagGTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
EST: gi|34549479|gb|CF517711.1|CF517711
EST:     CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACG                         GTTCAGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
genomic: CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctc ... catgtttcagGTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
EST: gi|33410548|gb|CF216175.1|CF216175
EST:     CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACG                         GTTCAGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
genomic: CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctc ... catgtttcagGTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
EST: gi|351023375|gb|FQ432758.1|FQ432758
EST:     CGCCGGCGACTCAGTCGCTGGCGCTTTCATAGGCTCCATTTTCGGCTACG                         GTTCGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG
genomic: CGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctc ... catgtttcagGTTTGGGTTTGGTTAAGAAAAAAGGCTTTAAAGGATCCTTTGCAGAGGCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTTTGAAAGCTAACCTTTCCGGTCCTCCTATAGTATGCCTTCTCAGGTTCGCCGGCGACTCAGTCGCTGGCGCTTTCATGGGCTCCATTTTCGGCTACGgttcgttctctctcttgtaatttttttatgaatgtgctttgtgtttgcattttttttattctctggtttttcatattagttgattttgcttgttaatatt

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