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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTGGATGGACAACCTGACCTCTTCATCCACATTGTCCCTGATAAGACAAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaaatagtagtagcatgcatatggtttatcattattttataaacatttgaaactgatgtttatgtccctaattattatctgctgttaatgctttcag

Basic information

species Vitis vinifera
transcript Vv19s0015g01090.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352772794|gb|FQ473832.1|FQ473832
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|110702081|gb|EE080389.1|EE080389
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|110732671|gb|EE108162.1|EE108162
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|110700330|gb|EE078246.1|EE078246
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|110710048|gb|EE086040.1|EE086040
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|71868398|gb|DT017453.1|DT017453
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|161719355|gb|FC064846.1|FC064846
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|71866570|gb|DT015625.1|DT015625
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|77584840|gb|DV221498.1|DV221498
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|71870453|gb|DT019508.1|DT019508
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|34549634|gb|CF517866.1|CF517866
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|77583907|gb|DV220989.1|DV220989
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|110391110|gb|EC956066.1|EC956066
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|294967235|gb|GW840110.1|GW840110
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|110399715|gb|EC966236.1|EC966236
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|352777316|gb|FQ473950.1|FQ473950
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|161706396|gb|FC055483.1|FC055483
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|34547536|gb|CF515768.1|CF515768
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|110693025|gb|EE068905.1|EE068905
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|71870523|gb|DT019578.1|DT019578
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|29781567|gb|CB346110.2|CB346110
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|71873432|gb|DT022487.1|DT022487
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|110367605|gb|EC931548.1|EC931548
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|30252217|gb|CB969768.1|CB969768
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCGAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|71855559|gb|DT004614.1|DT004614
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|71857517|gb|DT006572.1|DT006572
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|352764854|gb|FQ471914.1|FQ471914
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|71867737|gb|DT016792.1|DT016792
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|29783661|gb|CB349984.2|CB349984
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|110413166|gb|EC978943.1|EC978943
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|352782195|gb|FQ470097.1|FQ470097
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|37187704|gb|CF607057.1|CF607057
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|110727516|gb|EE104363.1|EE104363
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|71868727|gb|DT017782.1|DT017782
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|161705813|gb|FC057090.1|FC057090
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|71865720|gb|DT014775.1|DT014775
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|110687291|gb|EE064571.1|EE064571
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|71875177|gb|DT024232.1|DT024232
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|254917303|gb|GR906129.1|GR906129
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|161705719|gb|FC055798.1|FC055798
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA
EST: gi|30252231|gb|CB969782.1|CB969782
EST:     AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTG                         ATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCGAAGAATTCA
genomic: AAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaa ... atgctttcagATTTGGTGAACAACCTTGGTACCATTGCTCGATCAGGAACCAAAGAATTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGCTGGATGGACAACCTGACCTCTTCATCCACATTGTCCCTGATAAGACAAACAACACATTGTCCATCATTGATAGTGGAATTGGAATGACCAAGGCTGgtaagcagaaatagtagtagcatgcatatggtttatcattattttataaacatttgaaactgatgtttatgtccctaattattatctgctgttaatgctttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA