Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCCAGGCTGAGATCAACCAACTCTTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtcctatactttttatctttttttttcctcatttaatcagtttttttttcgcgatcctgttttatttgcggctgatctgttctctgttggtttatt...

Basic information

species Vitis vinifera
transcript Vv19s0015g01090.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01090.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G44590.1 (Glycine max), 5'ss of exon 1
TTTCCAGGCTGAGATCAACCAACTCTTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtcctatactttttatctttttttttcctcatttaatcagtttttttttcgcgatcctgttttatttgcggctgatctgttctctgttggtttatt
||||||||||||||||||||| ||| | ||| | ||||||||||||||||||  ||||||||||||||| || ||||| |||||||||||  |||| |||||| ||    |  |||||  ||  ||   |  |  |||   |   |||  |   | | |  |||| |   | ||  |    |   ||    || ||||||
TTTCCAGGCTGAGATCAACCAGCTCCTCAGTCTCATCATCAACACCTTCTACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttcttcgtttttcgctccttgacttgttgtttctgcttgtttcgtgatgtgtttatgttcttcatccgattttattcaactaacatgctttatt

upper sequence: Vv19s0015g01090.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G08220.1 (Glycine max), 5'ss of exon 1
-TTTCCAGGCTGAGATCAACCAACTCTTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtcctatactttttatctttttttttcctcatttaatcagtttttttttcgcgatcctgttttatttgcggctgatctgttctctgttggtttatt--
 ||||||||||||||||||||| ||| | ||| | ||||||||||||||||||  ||||||||| || || || ||||| |||||||||||  ||||||||||||||    |  || || ||| ||||  | |   |||     |||   || | ||  | ||| || ||| | | |  || |||  | | |      |||  
CTTTCCAGGCTGAGATCAACCAGCTCCTCAGTCTCATCATCAACACCTTCTACTCCAACAAGGAAATCTTCCTTCGTGAACTCATCAGCAACGCCTCTGAtgtaagtttcttcgttcttctctcttttccttcctttttctctcgttgacttgttgc--ttctgcttgattcgtgacgtatttgtgtttt-tcatccaattta

upper sequence: Vv19s0015g01090.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S220_83V6.1 (Physcomitrella patens), 5'ss of exon 1
TTTCCAGGCTGAGATCAACCAACTCTTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtcctatactttttatctttttttttc---ctcatttaatcagtttttttttcgcgatcctgttttatttgcggctgatctgttctctgttggtttatt-
||||||||| |||||||| ||  | ||||||||||| |||||||| |||||||| ||||||||||| ||  |  | || ||||||||||| || ||||||||| ||  | |   ||  | |||||| ||      ||  |   |||| | |  ||| | |    || ||| | ||||  |||  |   |  ||   | | | | 
TTTCCAGGCGGAGATCAATCAGTTGTTGAGTTTGATTATCAACACTTTCTACAGTAACAAGGAGATATTCTTGAGAGAACTCATCAGCAACTCTTCTGATgtaggtgtttttgcttggaactttttgttgtaggttctgtgcctcagatatgctttagag---ttggtttctatgcga-tgacattagcgatgcccgctaacta

upper sequence: Vv19s0015g01090.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S220_79V6.1 (Physcomitrella patens), 5'ss of exon 1
TTTCCAGGCTGAGATCAACCAACTCTTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtc-ctatactttttatctttttttttcctcatttaatcagtttttttttcgcgatcctgttttatttgcggctga--tctgttctctgttggtttatt
 |||||||| |||||||||||  |  | |||||||| |||||||| ||||||||||||||||| |||||  |  | ||| | ||||| || || || ||||||| |  || ||   |||  |   || ||   |  || ||||| | |   ||   | |||  | |    |||||  | |  ||||     |   |   |   
CTTCCAGGCGGAGATCAACCAGTTGCTTAGTTTGATTATCAACACTTTCTACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttctttaaacttttgcaagttcttgaatatttgaatcattctcagttgatctatcagggtcgcattgcgctttaagtctgagaattccagacat---

upper sequence: Vv19s0015g01090.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S258_52V6.1 (Physcomitrella patens), 5'ss of exon 1
TTTCCAGGCTGAGATCAACCAACTCTTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta-tactttttatctttttttttcctcatttaatcagtttttttttcgcgatcctgttttatttgcg-gctgatctgttctctgttggtttatt
 || ||||| || ||||| ||  |  ||||||||||||||||||||||||||||||||||||||||||| || || || || ||||||||||| |||||||||||| ||| | ||    |   |    |    || | |  || |  || |  | || |  || | |   |   | ||    |  ||||  ||||||  |  
CTTTCAGGCGGAAATCAATCAGTTGCTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTCCTGCGAGAACTTATCAGCAATTCTTCTGATgtaagtgctagtgctgacgaaagtcccatgcggtcttcttgtcgggattgtagtggccagtctatctgtgtcatgtgcacgccgattcttggttggtgca--

upper sequence: Vv19s0015g01090.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S83_80V6.1 (Physcomitrella patens), 5'ss of exon 1
TTTCCAGGCTGAGATCAACCAACTCTTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtcctatactttttatctttttttttcctcatttaatcagtttttttttcgcgatcctgttttatttgcggctgatctgttctctgttggtttatt---
 |||||||| ||||| || ||  |  |||||||||| ||||||||||||||||||||||| || |||||  | || ||| | ||||| || || || |||||||||   || | |   |  |||||||        ||  ||  || | | |  |     |   ||   | || | ||     | || ||   | ||  |   
CTTCCAGGCAGAGATTAATCAGTTGCTGAGTTTGATTATCAACACCTTCTACAGCAACAAAGAAATTTTCTTACGAGAGTTGATCAGTAACTCATCCGATgtaagt---atccatggaacttttttttccttatgcttggtcgcttgtctctgggttcctcgtcttctgtggcagttgtgtcatgctttgaatgcttccttcc

upper sequence: Vv19s0015g01090.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S291_62V6.1 (Physcomitrella patens), 5'ss of exon 1
TTTCCAGGCTGAGATCAACCAACTCTTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtcctat---actttttatctttttttttcctcatttaatcagtttttttttcgcgatc--ctgttttatttgcggctgatctgttctctgttggtttatt
||||||||| |||||||| ||| | |||||||||||||| ||||||||||| |||||||||||||||||  | || || |||||||| |||||||| |||||||||  | |   ||  ||  |  | |  | |     | | |||   | | | || |  ||   | ||    || |||        |||  | || |       
TTTCCAGGCGGAGATCAATCAATTGTTGAGTTTGATCATTAACACCTTCTATAGCAACAAGGAGATTTTCTTGCGAGAACTCATCAGTAATTCCTCGGATgtaagtgttttttcacccttgcttgtgtactgtttgtgtctcatcgtgtctctatttgtcatttgcggtggagttggcgaggccggcgtttcccgtagag-----

upper sequence: Vv19s0015g01090.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ25533 (Selaginella moellendorffii), 5'ss of exon 1
TTTCCAGGCTGAGATCAACCAACTCTTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtcctatactttttatc-----tttttttttcctcatttaatcagtttttttttcgcgatcctgttttatttgcggctgatctgttctctgttggtttatt--
 |||||||| ||||||||||| ||  | ||| | |||||||||||||||||||||||||||||||| ||  | || ||||||||||||||| |||| ||||| |||  || |   |   ||     | ||||  | ||  | | |||  | |||   |         | ||| |   ||     |   |||| | |  | ||     
CTTCCAGGCGGAGATCAACCAGCTTCTCAGTCTCATCATCAACACCTTCTACAGCAACAAGGAGATCTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagtgttagatgctcgttcggcgatattttactgctattctcatcgatctttgccttctttctgcgatttctcaccgatctttgcattctttctgcgatttccag

upper sequence: Vv19s0015g01090.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ29061 (Selaginella moellendorffii), 5'ss of exon 1
TTTCCAGGCTGAGATCAACCAACTCTTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtcctatactttttatctttttttttcctcatttaatcagtttttttttcgcgatcctgttttatttgcggctgatctgttctctgttggtttatt
 |||||||||||||||||||| ||  | ||| | ||||||||||| |||||||||||||||||||||||  | || ||||||||||||||| |||| ||||| |||  |   | |  |   | ||    | ||  |  ||     ||| || |    || |||      | | | ||   | |                 
GTTCCAGGCTGAGATCAACCAGCTTCTCAGTCTCATCATCAACACTTTCTACAGCAACAAGGAGATTTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagtatttcgcctccttgttcttccagttcttgtcaaact--ctttcttcttctcatgctgcgccgct-gtgact--ccag-----------------

upper sequence: Vv19s0015g01090.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ22362 (Selaginella moellendorffii), 5'ss of exon 1
TTTCCAGGCTGAGATCAACCAACTCTTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtcctatactttttatc-----tttttttttcctcatttaatcagtttttttttcgcgatcctgttttatttgcggctgatctgttctctgttggtttatt--
 |||||||| ||||||||||| ||  | ||| | |||||||||||||||||||||||||||||||| ||  | || ||||||||||||||| |||| ||||| |||  || |   |   ||     | |||   | |   | | |||  | |||   |         | ||| |   ||     |  ||||| | |  | ||     
CTTCCAGGCGGAGATCAACCAGCTTCTCAGTCTCATCATCAACACCTTCTACAGCAACAAGGAGATCTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagtgttagatgctcgttcggcgatatttcactgcgattctcatcgatctttgccttctttctgcgatttctcaccgatctttgcgttctttctgcgatttccag

upper sequence: Vv19s0015g01090.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ17594 (Selaginella moellendorffii), 5'ss of exon 1
TTTCCAGGCTGAGATCAACCAACTCTTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtcctatactttttatctttttttttcctcatttaatcagtttttttttcgcgatcctgttttatttgcggctgatctgttctctgttggtttatt
 |||||||||||||||||||| ||  | ||| | ||||||||||| |||||||||||||||||||||||  | || ||||||||||||||| |||| ||||| |||  |   | |  |   |    || |  |||     |   || || |   ||    ||| | |   | | |                         
GTTCCAGGCTGAGATCAACCAGCTTCTCAGTCTCATCATCAACACTTTCTACAGCAACAAGGAGATTTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagtatttcgcctcgttcttccagttcttgtcaaactctttcttcttctcatgctgcgctgctgtgactccag-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352772794|gb|FQ473832.1|FQ473832
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|110702081|gb|EE080389.1|EE080389
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|110732671|gb|EE108162.1|EE108162
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|110700330|gb|EE078246.1|EE078246
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|110710048|gb|EE086040.1|EE086040
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|71868398|gb|DT017453.1|DT017453
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|161719355|gb|FC064846.1|FC064846
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|71866570|gb|DT015625.1|DT015625
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|77584840|gb|DV221498.1|DV221498
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|71870453|gb|DT019508.1|DT019508
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|34549634|gb|CF517866.1|CF517866
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|77583907|gb|DV220989.1|DV220989
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|110391110|gb|EC956066.1|EC956066
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|294967235|gb|GW840110.1|GW840110
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|110399715|gb|EC966236.1|EC966236
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|352777316|gb|FQ473950.1|FQ473950
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|161706396|gb|FC055483.1|FC055483
EST:     GGAGATTTTTCTCCGTGAGCTCATCAGC-ATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: GGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|34547536|gb|CF515768.1|CF515768
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|110693025|gb|EE068905.1|EE068905
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|71870523|gb|DT019578.1|DT019578
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|29781567|gb|CB346110.2|CB346110
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|71873432|gb|DT022487.1|DT022487
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|110367605|gb|EC931548.1|EC931548
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|30252217|gb|CB969768.1|CB969768
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|71855559|gb|DT004614.1|DT004614
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|71857517|gb|DT006572.1|DT006572
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|352764854|gb|FQ471914.1|FQ471914
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|71867737|gb|DT016792.1|DT016792
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|110413166|gb|EC978943.1|EC978943
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|352782195|gb|FQ470097.1|FQ470097
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GC-TTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|37187704|gb|CF607057.1|CF607057
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|110727516|gb|EE104363.1|EE104363
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|71868727|gb|DT017782.1|DT017782
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|161705813|gb|FC057090.1|FC057090
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|71865720|gb|DT014775.1|DT014775
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|110687291|gb|EE064571.1|EE064571
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|71875177|gb|DT024232.1|DT024232
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|254917303|gb|GR906129.1|GR906129
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|161705719|gb|FC055798.1|FC055798
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
EST: gi|30252231|gb|CB969782.1|CB969782
EST:     ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGAT                         GCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT
genomic: ACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtccta ... ccatatttagGCTTTGGACAAGATCAGGTTTGAGAGCTTGACTGACAAAAGCAAGCTGGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCCAGGCTGAGATCAACCAACTCTTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtcctatactttttatctttttttttcctcatttaatcagtttttttttcgcgatcctgttttatttgcggctgatctgttctctgttggtttatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA