1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gttatgattatccccaagctccaatgatacaagtctaacatggatttcagatagtaaactgtacctgaaatttctctaaaatgtttctgaacttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAAACTTCTTAAGGCATATGTTGTTGCTGATCCAGAAATTCAG
species | Vitis vinifera |
transcript | Vv18s0001g15050.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATEST: gi|351030454|gb|FQ432392.1|FQ432392
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGG-TTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGAT
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|45368324|gb|CK906683.1|CK906683
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|351048563|gb|FQ448837.1|FQ448837
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGGCATTTGGGGATEST: gi|349815543|gb|FQ400699.1|FQ400699
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTG-CATTTGGGGAT
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|161716302|gb|FC064648.1|FC064648
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: GATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTTGGGCAG GA-CCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTEST: gi|32245933|gb|CD711752.1|CD711752
genomic: GATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTT-GGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATT
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|83274595|gb|DV938692.1|DV938692
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: GATGAACGCCAAAGGATTGAAGATGCGGGAGGTTTCGTTATTTGGGCAG GAACCGGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|351023467|gb|FQ432850.1|FQ432850
genomic: GATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|351029448|gb|FQ436842.1|FQ436842
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|349817905|gb|FQ407894.1|FQ407894
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|352791261|gb|FQ474951.1|FQ474951
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCCTGCTGTTTCTCGTGCATTTGGEST: gi|351044250|gb|FQ447604.1|FQ447604
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGG
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|110371845|gb|EC935970.1|EC935970
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|349832452|gb|FQ421013.1|FQ421013
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCCGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|27584677|gb|CB007372.1|CB007372
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|349815027|gb|FQ410250.1|FQ410250
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|351025872|gb|FQ427884.1|FQ427884
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|351025088|gb|FQ433505.1|FQ433505
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|32245467|gb|CD711286.1|CD711286
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|351012826|gb|FQ430389.1|FQ430389
genomic: TTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGCGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|351030991|gb|FQ439027.1|FQ439027
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|161717197|gb|FC066571.1|FC066571
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|349830246|gb|FQ420506.1|FQ420506
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|351036088|gb|FQ463933.1|FQ463933
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCACAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGACAG GAACCTGGCTGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|110711257|gb|EE087557.1|EE087557
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|161719283|gb|FC064823.1|FC064823
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGGTGGTGGTGTTTTCTGCTGTTEST: gi|351033310|gb|FQ446542.1|FQ446542
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCT-TGCTGTT
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|110377520|gb|EC942589.1|EC942589
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|351021784|gb|FQ437169.1|FQ437169
genomic: TGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|351046056|gb|FQ441439.1|FQ441439
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAEST: gi|161715035|gb|FC063620.1|FC063620
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATA
EST: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAG GAACCTGGCGGGGTGGTGGGTGT-CT-GCTGTT-CTCGTG
genomic: TGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttca ... acttcactagGAACCTGGCGGGTTGGTGG-TGTTCTTGCTGTTTCTCGTG
ttcagatagtaaactgtacctgaaatttctctaaaatgtttctgaacttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAAACTTCTTAAGGCATATGTTGTTGCTGATCCAGAAATTCAG
ctctaaa putative branch site (score: 3)
cttcact putative PPT
aaatttctctaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatgattatccccaagctccaatgatacaagtctaacatggatttcagatagtaaactgtacctgaaatttctctaaaatgtttctgaacttcactagGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAAACTTCTTAAGGCATATGTTGTTGCTGATCCAGAAATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - tccccaa
- - - - - - - - -gctccaa
- - - - - - - - - - - - -gatacaa
- - - - - - - - - - - - - - - - - - - catggat
- - - - - - - - - - - - - - - - - - - - - - - - - - agtaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatgt