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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGGAGGTTCAAGAACCGCGGAATACCTCAAAAACAATCTTTTCAAGAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgttggtggatcttatgagaacaatttcttgctatcttttttcctggtgggttatttcataacagaagattctattgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g15050.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g15050.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G43810.1 (Glycine max), 5'ss of exon 3
GTCATGGAGGTTCAAGAACCGCGGAATACCTCAAAAACAATCTTTTCAAGAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatga-------tgttggtggatcttatgagaacaatttcttgctatcttttttcctggtgggttatttcataac--agaagattctattgcag-----------------------------------
|||| ||||||||  | || || ||||| || ||||||||||| || |||||||| |||||||||||  | || |||||||| |||||| | || || ||||||        | ||| |  ||  || ||          ||   ||||    |    || | ||  ||   |||   || | |   | |                                       
GTCACGGAGGTTCCCGGACTGCAGAATATCTGAAAAACAATCTGTTTAAGAATTTGAGTAGCCACCCTAACTTTATCAAAGACACAAAGACTGCTATAGgtatgtacttcatttttgttaaattataggatgcagtaaaattttcatctcacattacagttgtttggtttgcaacctggatggtgtaaatattaacatatttttcttctaattatttgtttgattgcag

upper sequence: Vv18s0001g15050.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G38500.1 (Glycine max), 5'ss of exon 3
GTCATGGAGGTTCAAGAACCGCGGAATACCTCAAAAACAATCTTTTCAAGAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatga-------tgttggtggatcttatgag--aacaatttcttgctatcttttttcctggtgggttatttcataac--agaagattctattgcag-----------------------------------
|||||||||||||  | || || ||||| || ||||  ||||| || |||||||| ||||||||||| || || |||||||| |||||| | || || |||||         | ||| |  ||  || ||   |  ||  | ||||||||   || |   || | ||  ||   |||   ||   |   | |                                       
GTCATGGAGGTTCCCGGACTGCAGAATATCTGAAAAGTAATCTGTTTAAGAATTTGAGTAGCCACCCTGACTTTATCAAAGACACAAAGACTGCTATAGgtatatacttcatttttgttaaattataggatgcagtaaacttttgctatcacattac--agttgtttggtttgcaacctggacagtgtaaatattaacatgttttttgtctaattatttgtttgattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110712077|gb|EE089286.1|EE089286
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|351030454|gb|FQ432392.1|FQ432392
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|351048563|gb|FQ448837.1|FQ448837
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|349815543|gb|FQ400699.1|FQ400699
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|161716302|gb|FC064648.1|FC064648
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|351023467|gb|FQ432850.1|FQ432850
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|351029448|gb|FQ436842.1|FQ436842
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|349817905|gb|FQ407894.1|FQ407894
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|352791261|gb|FQ474951.1|FQ474951
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|351044250|gb|FQ447604.1|FQ447604
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|349832452|gb|FQ421013.1|FQ421013
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|27584677|gb|CB007372.1|CB007372
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|349815027|gb|FQ410250.1|FQ410250
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|351025872|gb|FQ427884.1|FQ427884
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|351025088|gb|FQ433505.1|FQ433505
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|351012826|gb|FQ430389.1|FQ430389
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|351030991|gb|FQ439027.1|FQ439027
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|161717197|gb|FC066571.1|FC066571
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|349830246|gb|FQ420506.1|FQ420506
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGGGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|351036088|gb|FQ463933.1|FQ463933
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|110711257|gb|EE087557.1|EE087557
EST:     GAATTTAAGCAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|161719283|gb|FC064823.1|FC064823
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|71858998|gb|DT008053.1|DT008053
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|351033310|gb|FQ446542.1|FQ446542
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|71855048|gb|DT004103.1|DT004103
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|351021784|gb|FQ437169.1|FQ437169
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAAACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|351046056|gb|FQ441439.1|FQ441439
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAGAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
EST: gi|161715035|gb|FC063620.1|FC063620
EST:     GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTG                         CTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC
genomic: GAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGgtatgatgtt ... tctattgcagCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTC