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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCACTGGTACATTTATTGCTACATCAAGATATGGGAGTGCCACTCCCATACCACCATCTGTTATCAGCCGTGGTGCTGGCTGGCTGgtaggatgagttctatcacacttgggataagtcttgtatttctcttgattttggtttccataattttgtgtcatcatcatttgaggaatctttctgaatttcag

Basic information

species Vitis vinifera
transcript Vv18s0001g08930.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g08930.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA14G09920.1 (Glycine max), 5'ss of exon 10
TCCACTGGTACATTTATTGCTACATCAAGATATGGGAGTGCCACTCCCATACCACCATCTGTTATCAGCCGTGGTGCTGGCTGGCTGgtaggatgagttctatcacacttgggataagtcttgtatttctcttgattttggtttccataattttgtgtcatcatcatttgaggaatctttctga--atttcag
|  |||||||||| |  |||     |||||||||| |||||||| ||  | ||||||||||||||||||||||| ||||| ||| |||||||||       | || |||| |   ||||||    |  ||||||  |      |  |  ||| || | |    | | ||| |   |  || |    |||| ||
TATACTGGTACATGTTATGCCGTGGCAAGATATGGAAGTGCCACACCAGTGCCACCATCTGTTATCAGCCGTGGAGCTGGATGGATGgtaggat-----tcaccaaactttg--caagtctcccttgactcttgtgtaca---taaaagattgtgaggccattttacttgtgtcgttgttattgtgattttag

upper sequence: Vv18s0001g08930.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA17G35240.1 (Glycine max), 5'ss of exon 10
TCCACTGGTACATTTATTGCTACATCAAGATATGGGAGTGCCACTCCCATACCACCATCTGTTATCAGCCGTGGTGCTGGCTGGCTGgtaggatgagttctatcacacttgggataagtcttgtatttctcttgattttggtttccataattttgtgtcatcat---catttgaggaatctttc---tgaatttcag-----
|  |||||||||| |  |||| |    |||||||| ||||||||           ||||||||||||||||||| ||||| ||| |||||||||       |  | |||| |   || |||       | ||||| | | ||   |||||  ||||| || |||   || |||    ||  ||    ||| |||        
TATACTGGTACATGTTATGCTGCGGTGAGATATGGAAGTGCCAC-----------CATCTGTTATCAGCCGTGGAGCTGGATGGATGgtaggat-----tcactaaactttg--caattct-------cccttgactattgtgcacataaaattgtgacaccattttcacttgtttcattgttgttgtgattttttaggtag