Sequence
atgc intronic sequence ATGC exonic sequence...cacgcatacaatgcagcagggttttcagaaaagattgtttcccactcctaccatttgtatctttccaaattatttcttattagtatacttctctgtacagAGAAAATGTTGGGCTATTGGCAGTGACAAGAGTTGGAAGTCGAAGAGTCATTCAAATATCAGCAGGGTTTATGATATTCTTCTCTGTATTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g08930.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA04G04890.1 (Glycine max), 3'ss of exon 11
cacgcatacaatgcagcagggttttcagaaaagattgtttcccactcctaccatttgtatctttccaaattatttcttattagtatacttctctg--tacagAGAAAATGTTGGGCTATTGGCAGTGACAAGAGTTGGAAGTCGAAGAGTCATTCAAATATCAGCAGGGTTTATGATATTCTTCTCTGTATTAG
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agttcctgtta-gtacctagtcctgctccaaaaaccatgctggagttgagcctctt-tatccatctgcataattttgcatatatgcattgctcttgtttcagGGAGAATGCTGGATTATTGGCATTGACAAAGGCGGGAAGCCGAAGAGTCATCCAAATATCAGCCGGCTTTATGATTTTCTTCTCTATTGCTG
upper sequence: Vv18s0001g08930.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA06G04990.1 (Glycine max), 3'ss of exon 10
-cacgcatacaatgcagcagggttttcagaaaagattgtttcccactcctaccat-ttgtatctttccaaattatttcttattagtatacttctctgtacagAGAAAATGTTGGGCTATTGGCAGTGACAAGAGTTGGAAGTCGAAGAGTCATTCAAATATCAGCAGGGTTTATGATATTCTTCTCTGTATTAG
|| | | | | | | | | ||| | | | | | || || | | | || | | || | ||| | || ||| | ||| || |||| ||| |||||||| |||||| ||| ||||| ||||||||||| ||||||||||| || |||||| | || |||||| || |
ttactctgttagtac--ctagtcctgctccaaaaaccatgttggagttgagcctcattatccatctgcataattttgcgtatatgcattgctcttgtttcagGGAGAATGCTGGATTATTGGCATTGACAAAAGTGGGAAGCCGAAGAGTCATCCAAATATCAGCCGGCTTTATGGTTTTTTTCTCTATAGCTG
upper sequence: Vv18s0001g08930.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT1G65550.1 (Arabidopsis thaliana), 3'ss of exon 10
------------------------cacgcatacaatgcagcagggttttcagaaaagattgtttcccac-------tcctaccatttgtatctttccaaattatttct--tattagtatacttctctgtacagAGAAAATGTTGGGCTATTGGCAGTGACAAGAGTTGGAAGTCGAAGAGTCATTCAAATATCAGCAGGGTTTATGATATTCTTCTCTGTATTAG
|| | ||| | | ||| ||| || | | | | || | || | | | || || | ||| || | | | | ||||||||||||||| || |||||| |||| | |||| ||||||||||| || ||||||||||| | || ||||| || ||||| | || |
gtaaataaactcatctctaaattacaaatttttaatttttcgagcatttatcttaagtttctcttgtatatataaattgtagtaattaaaggctaatgatatagttttgatatgggtgtgacttaatattcagAGAAAATGTTGGACTTTTGGCAATGACTAAGATTGGGAGTCGAAGAGTGATACAAATATCAGCTGCATTCATGATTTTTTTCTCCATTTTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcctaccatttgtatctttccaaattatttcttattagtatacttctctgtacagAGAAAATGTTGGGCTATTGGCAGTGACAAGAGTTGGAAGTCGAAGAGTCATTCAAATATCAGCAGGGTTTATGATATTCTTCTCTGTATTAG
tacttctct CT-rich tract
aaattatttcttatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cacgcatacaatgcagcagggttttcagaaaagattgtttcccactcctaccatttgtatctttccaaattatttcttattagtatacttctctgtacagAGAAAATGTTGGGCTATTGGCAGTGACAAGAGTTGGAAGTCGAAGAGTCATTCAAATATCAGCAGGGTTTATGATATTCTTCTCTGTATTAG
cacgcat
- - - - caatgca
- - - - - - - - - - - - - -gaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - ccatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaatt