1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agatgtcatccatatatatatatatagttttggtgtgtattatttttttgttctttctacagaacatctaagttctgacatatcttaatatgatgggcagGGGTTAAATGGACTCTGTACTGCAAATGAGAAGTTCAACACTGATAGCATAGAAAATCTGAAATTCAGTTCTCTGACTGCACAAAGAAACTCTCTTTCAG
species | Vitis vinifera |
transcript | Vv18s0001g05740.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGTGCTTTCATCCAGTTGCTTTCCCACATTTGATGTAATCTCAGATAAG GGGTTAAATGGACTCTGTACTGCAAATGAGAAGTTCAACACTGATAACATA
genomic: TGGTGCTTTCATCCAGTTGCTTTCCCACATTTGATGTAATCTCAGATAAGgtatgaaact ... tgatgggcagGGGTTAAATGGACTCTGTACTGCAAATGAGAAGTTCAACACTGATAGCATA
ttttgttctttctacagaacatctaagttctgacatatcttaatatgatgggcagGGGTTAAATGGACTCTGTACTGCAAATGAGAAGTTCAACACTGATAGCATAGAAAATCTGAAATTCAGTTCTCTGACTGCACAAAGAAACTCTCTTTCAG
atatcttaatatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatgtcatccatatatatatatatagttttggtgtgtattatttttttgttctttctacagaacatctaagttctgacatatcttaatatgatgggcagGGGTTAAATGGACTCTGTACTGCAAATGAGAAGTTCAACACTGATAGCATAGAAAATCTGAAATTCAGTTCTCTGACTGCACAAAGAAACTCTCTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - -tcatcca
- - - - - - - - - - - - - - - tggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - acagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgacat