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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTTGCTTTCTTTGTCTGGACTCCAAGATGCAAGACAGCCAAATTATGGTCACAATGATGAGAATAGTCAACTTGCCCATCAAATTTCTCCTGGAAATgtaagttggtggttatagtacttgtttagcccctttcaacagtgcaattcatatttctttctattatgttgtattcaacag

Basic information

species Vitis vinifera
transcript Vv18s0001g05740.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34545917|gb|CF514149.1|CF514149
EST:     GTCACAATGATGAGAATAGTCAACTTGCCCATCAATTTTCTCCTGGAAAT                         GCAGCTGGTCTTACCCTCAAAGATGACAATAGTAAGGATGGTCTTATTTGC
genomic: GTCACAATGATGAGAATAGTCAACTTGCCCATCAAATTTCTCCTGGAAATgtaagttggt ... tattcaacagGCAGCTGGTCTTACCCTCAAAGATGACAATAGTAAGGATGGTCTTGTTTGC
EST: gi|34544926|gb|CF513158.1|CF513158
EST:     GTCACAATGATGAGAATAGTCAACTTGCCCATCAATTTTCTCCTGGAAAT                         GCAGCTGGTCTTACCCTCAAAGATGACAATAGTAAGGATGGTCTTATTTGC
genomic: GTCACAATGATGAGAATAGTCAACTTGCCCATCAAATTTCTCCTGGAAATgtaagttggt ... tattcaacagGCAGCTGGTCTTACCCTCAAAGATGACAATAGTAAGGATGGTCTTGTTTGC