Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161707856|gb|FC056475.1|FC056475EST: ACTGAAGCAGTGCAAGCTCGATGCTCGCCGCGAGCAATGGCTTTCCAAAG TCAAGAACAATGGATGTAGGGGAGAATCGAAGGGTATTCCGGAATCTTCAA
genomic: ATTGAAGCAGTGCAAGCTCGATGCTCGCCGCGAGCAATGGCTTTCCAAAGgtatgcggtt ... ttttgtacagTCAAGAACAATGGATGTAGGGGAGAATCGGAGGGTATTCCGGAATCTTCAA
EST:
gi|34547511|gb|CF515743.1|CF515743EST: ATTGAAGCAGTGCAAGCTCGATGCTCGCCGCGAGCAATGGCTTTCCAAAG TCAAGAACAATGGATGTAGGGGAGAATCGAAGGGTATTCCGGAATCTTCAA
genomic: ATTGAAGCAGTGCAAGCTCGATGCTCGCCGCGAGCAATGGCTTTCCAAAGgtatgcggtt ... ttttgtacagTCAAGAACAATGGATGTAGGGGAGAATCGGAGGGTATTCCGGAATCTTCAA
EST:
gi|294967105|gb|GW839980.1|GW839980EST: ATTGAAGCAGTGCAAGCTCGATGCTCGCCGCGAGCAATGGCTTTCCAAAG TCAAGAACAATGGATGTAGGGGAGAATCGGAGGGTATTCCGGAATCTTCAA
genomic: ATTGAAGCAGTGCAAGCTCGATGCTCGCCGCGAGCAATGGCTTTCCAAAGgtatgcggtt ... ttttgtacagTCAAGAACAATGGATGTAGGGGAGAATCGGAGGGTATTCCGGAATCTTCAA
EST:
gi|34551056|gb|CF519254.1|CF519254EST: ATTGAAGCAGTGCAAGCTCGATGCTCGCCGCGAGCAATGGCTTTCCAAAG TCAAGAACAATGGATGTAGGGGAGAATCGAAGGGTATTCCGGAATCTTCAA
genomic: ATTGAAGCAGTGCAAGCTCGATGCTCGCCGCGAGCAATGGCTTTCCAAAGgtatgcggtt ... ttttgtacagTCAAGAACAATGGATGTAGGGGAGAATCGGAGGGTATTCCGGAATCTTCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatatcttcaactgatctattattttgattccgattgatggctgttttgtacagTCAAGAACAATGGATGTAGGGGAGAATCGGAGGGTATTCCGGAATCTTCAATGCATAAGAGAAATGAAAGCAATGAAAGCAATCGTTCATTAGAAAATTT
ctgtttt CT-rich tract
atctattattttgatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcggttgatctctcctctctgtctctatatatgtttaggcatgcatgcatgcatttatatcttcaactgatctattattttgattccgattgatggctgttttgtacagTCAAGAACAATGGATGTAGGGGAGAATCGGAGGGTATTCCGGAATCTTCAATGCATAAGAGAAATGAAAGCAATGAAAGCAATCGTTCATTAGAAAATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA