Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161707856|gb|FC056475.1|FC056475EST: TCACCAGCGCTGCGGCCTCGATCTCTAAGGAGTTCGGCAAGAAGAAGAGG ACGAACAGGACAGCAAAACTGAAGCAGTGCAAGCTCGATGCTCGCCGCGAG
genomic: TCACCAGCGCTGCGGCCTCGATCTCTAAGGAGTTCGGCAAGAAGAAGAGGgttagaattc ... tggttttcagACGAACAGGACAGCAAAATTGAAGCAGTGCAAGCTCGATGCTCGCCGCGAG
EST:
gi|34547511|gb|CF515743.1|CF515743EST: TCACCAGCGCTGCGGCCTCGATCTCTAAGGAGTTCGGCAAGAAGAAGAGG ACGAACAGGACAGCAAAATTGAAGCAGTGCAAGCTCGATGCTCGCCGCGAG
genomic: TCACCAGCGCTGCGGCCTCGATCTCTAAGGAGTTCGGCAAGAAGAAGAGGgttagaattc ... tggttttcagACGAACAGGACAGCAAAATTGAAGCAGTGCAAGCTCGATGCTCGCCGCGAG
EST:
gi|294967105|gb|GW839980.1|GW839980EST: TCACCAGCGCTGCGGCCTCGATCTCGAAGGAGTTCGGCAAGAAGAAGAGG ACGAACAGGACAGCAAAATTGAAGCAGTGCAAGCTCGATGCTCGCCGCGAG
genomic: TCACCAGCGCTGCGGCCTCGATCTCTAAGGAGTTCGGCAAGAAGAAGAGGgttagaattc ... tggttttcagACGAACAGGACAGCAAAATTGAAGCAGTGCAAGCTCGATGCTCGCCGCGAG
EST:
gi|34551056|gb|CF519254.1|CF519254EST: TCACCAGCGCTGCGGCCTCGATCTCTAAGGAGTTCGGCAAGAAGAAGAGG ACGAACAGGACAGCAAAATTGAAGCAGTGCAAGCTCGATGCTCGCCGCGAG
genomic: TCACCAGCGCTGCGGCCTCGATCTCTAAGGAGTTCGGCAAGAAGAAGAGGgttagaattc ... tggttttcagACGAACAGGACAGCAAAATTGAAGCAGTGCAAGCTCGATGCTCGCCGCGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTTCCGTTCTGTGAAGGCGACTCGACTCAACCATGATTACCGATTCGATCACCAGCGCTGCGGCCTCGATCTCTAAGGAGTTCGGCAAGAAGAAGAGGgttagaattcaatctcagtttctttttctcttttctaaatttgttttgttttgttttgttcctggttctcttcagttcagtttgtttttgttcctcgcaatctgtctgtgttgtttgtcctcttttgtttgacgtgatttgtttgttttctgtggttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG