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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGAAGGAACCCTTGGTCAGATCTTCCTTTGTTCAAGCAGATGGGGTGAAGTTGCTTATCCCTTTAATTTCTCCAGCATCCACTCAGCAATCTATCCAGgtagcttttgtcattattggtggttaacaagtaagaaccaatcatcgtagccaagttactgaaaatgactgcatatcttctttgtaacag

Basic information

species Vitis vinifera
transcript Vv16s0039g01610.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g01610.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G06710.1 (Glycine max), 5'ss of exon 8
ACTGAAGGAACCCTTGGTCAGATCTTCCTTTGTTCAAGCAGATGGGGTGAAGTTGCTTATCCCTTTAATTTCTCCAGCATCCACTCAGCAATCTATCCAGgtagcttttgtcattattggtggttaacaagtaagaaccaatcatcgtagccaagttactgaaaatgactgcatatcttctttgtaacag----------
||| ||||||||  |||| || |||||||||||||| || |||||||| ||||| ||| | || || ||||| |||||||||||||| || || || ||||||  |||  |      |     | |  |   || | || |  | |          | | |        |  ||||  |     ||  |           
ACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCAGGCTGATGGGGTCAAGTTACTTGTGCCCTTGATTTCGCCAGCATCCACTCAACAGTCAATTCAGgtaagtttgttggactctacctctgagaatccaaaagccgagtaactggattttccttcagttggcttatatatattataccaataggataggtgcttga

upper sequence: Vv16s0039g01610.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA16G25740.1 (Glycine max), 5'ss of exon 8
ACTGAAGGAACCCTTGGTCAGATCTTCCTTTGTTCAAGCAGATGGGGTGAAGTTGCTTATCCCTTTAATTTCTCCAGCATCCACTCAGCAATCTATCCAGgtagcttttgtcattattggtggttaacaagtaagaaccaatcatcgtagccaagttactgaaaatgactgcatatcttctttgtaacag----------
||| ||||||||  |||| || |||||||||||||  || |||||||| ||||| ||| | || || ||||| |||||||||||||| || ||||| ||||||  |||  |      |     | |  |    | | |  |  | |          | | |        |  | ||  |     ||  |           
ACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCGGGCTGATGGGGTCAAGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAGgtaagtttgttggactctatctctgagaatccgaaatctgagtaactggattttccttcagttggcctatataaattataccaataggataggtgcttga

upper sequence: Vv16s0039g01610.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G42050.1 (Arabidopsis thaliana), 5'ss of exon 8
ACTGAAGGAACCCTTGGTCAGATCTTCCTTTGTTCAAGCAGATGGGGTGAAGTTGCTTATCCCTTTAATTTCTCCAGCATCCACTCAGCAATCTATCCAGgtagct-tttgtc-attattggtggttaacaagtaagaaccaatcatcgtagcc--aagttactgaaaatgactgcatatcttc-----tttgtaacag-
 || ||||||||  | |||||||| || |||||||| ||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| |||||||||||| || | | || | |    || |||  ||   || ||    ||     |||   || | | |      |  | || ||| |      |   |||| | 
GCTTAAGGAACCTGTTGTCAGATCGTCATTTGTTCAGGCAGATGGGGTGAAGTTACTTGTCCCTTTAATTTCCCCAGCATCCACTCAGCAGTCTATCCAGgtaactgtatatctaatggaagtagttttcagtgaataatgcttccataaagcaggaaataagtattgcagtttccaaatcatgcaaaatccttaacgga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30129395|gb|CB914734.1|CB914734
EST:     AGTTGCTTATCCCTTTAATTTCTCCAGCATCCACTCAGCAATCTATCCAG                         CTACTTTATGAAACTTGTCTTTGTGTTTGGCTCTTATCTTATTATGAACCT
genomic: AGTTGCTTATCCCTTTAATTTCTCCAGCATCCACTCAGCAATCTATCCAGgtagcttttg ... tttgtaacagCTACTTTATGAAACTTGTCTTTGTGTTTGGCTCTTATCTTATTATGAACCT
EST: gi|110706801|gb|EE082646.1|EE082646
EST:     AGTTGCTTATCCCTTTAATTTCTCCAGCATCCACTCAGCAATCTATCCAG                         CTACTTTATGAAACTTGTCTTTGTGTTTGGCTCTTATCTTATTATGAACCT
genomic: AGTTGCTTATCCCTTTAATTTCTCCAGCATCCACTCAGCAATCTATCCAGgtagcttttg ... tttgtaacagCTACTTTATGAAACTTGTCTTTGTGTTTGGCTCTTATCTTATTATGAACCT