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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcttttgtcattattggtggttaacaagtaagaaccaatcatcgtagccaagttactgaaaatgactgcatatcttctttgtaacagCTACTTTATGAAACTTGTCTTTGTGTTTGGCTCTTATCTTATTATGAACCTGCAATCGAGTACTTGGCTACTTCTAGAACCCTACCACGACTAGTAGAGG

Basic information

species Vitis vinifera
transcript Vv16s0039g01610.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g01610.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G25740.1 (Glycine max), 3'ss of exon 8
------------gtagcttttgtcattattggtggttaacaagtaagaaccaatcatcgtagccaagttactgaaaatgactgcatatcttctttgtaacagCTACTTTATGAAACTTGTCTTTGTGTTTGGCTCTTATCTTATTATGAACCTGCAATCGAGTACTTGGCTACTTCTAGAACCCTACCACGACTAGTAGAGG
              |    |    |||| |  ||   ||   |||     ||  |  | |    | |  ||  ||| | | ||   |  | || ||| |||||| ||||||||||| ||||| ||  | ||||||||||| |||||||| || ||||| || || |||||||||||||||||||| || |||||  | || |
tgatttatcaataaaataataaatattactaatga--aatttgtagatttcacgctgcttttttagggaacaaaaattaattgataaattcctctgtgacagCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCAGCAATTGAATATTTGGCTACTTCTAGAACCCTTCCGCGACTTATTGATG

upper sequence: Vv16s0039g01610.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G06710.1 (Glycine max), 3'ss of exon 8
------------gtagcttttgtcattattggtggttaacaagtaagaaccaatcatcgtagccaagttactgaaaatgactgcatatcttctttgtaacagCTACTTTATGAAACTTGTCTTTGTGTTTGGCTCTTATCTTATTATGAACCTGCAATCGAGTACTTGGCTACTTCTAGAACCCTACCACGACTAGTAGAGG
              |   ||    |||| || |    ||   |||     ||     | |    | |  ||  ||| | | ||   |  | || |    ||||| ||||||||||| ||||| ||  | ||||||||||| |||||||| || ||||| || || ||||||||||| |||||||| || |||||  | || |
tgatttatcaataaaatattaaatattactgataa--aatttgtagatttcacggtgcttttgtagggaacaaaaattaattgataaattcctcttcggcagCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCAGCAATTGAATATTTGGCTACTTCAAGAACCCTTCCGCGACTTATTGATG

upper sequence: Vv16s0039g01610.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G42050.1 (Arabidopsis thaliana), 3'ss of exon 8
------gtagcttttgtcattattg-gtggttaacaagtaagaaccaatcatcgtagccaagttactga---aaatgact-gcatatcttctttgtaacagCTACTTTATGAAACTTGTCTTTGTGTTTGGCTCTTATCTTATTATGAACCTGCAATCGAGTACTTGGCTACTTCTAGAACCCTACCACGACTAGTAGAGG
        || |||    |  |    |    |  |   |         |||| ||  |  |||  || |   |  ||| | |  |   |||      |||||| || |||||||| ||||| ||  | |||||  | || ||||||||||||||||| ||||||||||| || || || ||  | | | | ||    || |
tctgtttcagttttcagaaggaagaagcacctctctcttttttttttgtcatagtttctcagtgcctaattcatgtgatttgtgtgctttcgac-cgacagCTTCTGTATGAAACATGTCTCTGCATCTGGCTTCTGTCCTATTATGAACCTGCAATAGAGTACTTGGCAACATCGAGGACAATGCAAAGGCTCACGGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30129395|gb|CB914734.1|CB914734
EST:     AGTTGCTTATCCCTTTAATTTCTCCAGCATCCACTCAGCAATCTATCCAG                         CTACTTTATGAAACTTGTCTTTGTGTTTGGCTCTTATCTTATTATGAACCT
genomic: AGTTGCTTATCCCTTTAATTTCTCCAGCATCCACTCAGCAATCTATCCAGgtagcttttg ... tttgtaacagCTACTTTATGAAACTTGTCTTTGTGTTTGGCTCTTATCTTATTATGAACCT
EST: gi|110706801|gb|EE082646.1|EE082646
EST:     AGTTGCTTATCCCTTTAATTTCTCCAGCATCCACTCAGCAATCTATCCAG                         CTACTTTATGAAACTTGTCTTTGTGTTTGGCTCTTATCTTATTATGAACCT
genomic: AGTTGCTTATCCCTTTAATTTCTCCAGCATCCACTCAGCAATCTATCCAGgtagcttttg ... tttgtaacagCTACTTTATGAAACTTGTCTTTGTGTTTGGCTCTTATCTTATTATGAACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaccaatcatcgtagccaagttactgaaaatgactgcatatcttctttgtaacagCTACTTTATGAAACTTGTCTTTGTGTTTGGCTCTTATCTTATTATGAACCTGCAATCGAGTACTTGGCTACTTCTAGAACCCTACCACGACTAGTAGAGG
                                      tatcttcttt  CT-rich tract
                        tgaaaat  TA-rich tract