Sequence
atgc intronic sequence ATGC exonic sequenceTGGATTATTTCTTTCTGGAAGAACGTTGAGAGGATCTTTATTTGGAGGATGGAGACCTAAATCTGATCTTCATTCATTAGTAGACATGTATATGAGGAAGgtaagaaccacaattaatcttacagtggatttcagcctgaattttctcactttatttgtttttataccatgtcttgacttctgcctctcaaagcttcact...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0039g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os02g42520.2 (Oryza sativa), 5'ss of exon 9
TGGATTATTTCTTTCTGGAAGAACGTTGAGAGGATCTTTATTTGGAGGATGGAGACCTAAATCTGATCTTCATTCATTAGTAGACATGTATATGAGGAAGgtaagaaccacaattaatcttacagtggatttcagcctgaattttctcactttatttgtttttataccatgtcttgacttctgcctctcaaagcttcact-------
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TGCACTACTTCTGTCTGGAAGAACATTGAAGGGGTCTTTGTTTGGAGGATGGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGgtacggag-acaat--gtgttgtagaagcaaacatcctaataaaactgaattctatt--ttcagttaaaaatattaaattaagaagctgaa--cttcatcatatgta
upper sequence: Vv16s0039g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G149272_T02 (Zea mays), 5'ss of exon 9
TGGATTATTTCTTTCTGGAAGAACGTTGAGAGGATCTTTATTTGGAGGATGGAGACCTAAATCTGATCTTCATTCATTAGTAGACATGTATATGAGGAAGgtaagaaccacaatt------aatcttacagtggatttcagcctgaattttctcactttatttgtt----tttataccatgtcttgacttctgcctctcaaagcttcact
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TGCATTTCTTCTATCCGGAAGAACACTGAAGGGATCTATGTTTGGAGGATGGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatgattcttttgcagaaacaaatgtttgaaaacaaaataagattaacattattaattgttgaagtgtataa-atggattgattgccttctcccac---------
upper sequence: Vv16s0039g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA09G29070.1 (Glycine max), 5'ss of exon 9
TGGATTATTTCTTTCTGGAAGAACGTTGAGAGGATCTTTATTTGGAGGATGGAGACCTAAATCTGATCTTCATTCATTAGTAGACATGTATATGAGGAAGgtaagaaccacaattaatcttacagtggatttcagcctgaattttctcactttatttgtttttataccatgtcttgacttctgcctctcaaagcttcact-
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TGGGCTACTCCTAATGGGAAGAACATTGAAAGGATCTCTATTTGGAGGATGGAAACCTAAATCTGATCTTCCTTCATTAGTAGAGAAGTATCTCAACAAGgtaactgcaacagtacccaaaatacttcctctta-tctgaacatgactactttatatatttttactctaagctgaaacgtagcaatgtctaccttctgcat
upper sequence: Vv16s0039g00320.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA16G23820.1 (Glycine max), 5'ss of exon 11
TGGATTATTTCTTTCTGGAAGAACGTTGAGAGGATCTTTATTTGGAGGATGGAGACCTAAATCTGATCTTCATTCATTAGTAGACATGTATATGAGGAAGgtaagaaccacaattaatcttacagtggatttcagcctgaattttctcactttatttgtttttataccatgtcttgacttctgcctctcaaagcttcact---
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TGGACTACTCCTAATGGGAAGAACATTGAAAGGATCTCTATTTTGGGGATGGAAACCAAAATCTGATCTGCCTTCATTAGTAAAGAAGTACCTCAACAAGgtaactgaaacagtatacc---cggattcctctcatctgaacctgactactttatacgttttcactctaagctgaaacacggcaatgtctaccttctgcataaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110363936|gb|EC927570.1|EC927570EST: GGAGACCTAAATCTGATCTTCATTCATTAGTAGACATGTATATGAGGAAG GAAATCCAGATTGACGAATTCATCACTCATAATTTGCCTTTTGAGGATATT
genomic: GGAGACCTAAATCTGATCTTCATTCATTAGTAGACATGTATATGAGGAAGgtaagaacca ... ctaaatgcagGAAATCCAGATTGACGAATTCATCACTCATAATTTGCCTTTTGAGGATATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGATTATTTCTTTCTGGAAGAACGTTGAGAGGATCTTTATTTGGAGGATGGAGACCTAAATCTGATCTTCATTCATTAGTAGACATGTATATGAGGAAGgtaagaaccacaattaatcttacagtggatttcagcctgaattttctcactttatttgtttttataccatgtcttgacttctgcctctcaaagcttcact
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