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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATTAAACAGATGACTGATGGTGGGGCAGATTACTCATTTGAATGTATAGGCGATACTGGAATGGTGACTACTGCATTACAATCATGTTGTGATgtaagtcctgtgactctctgatccatgttttttatgtaaggaagctttacttgtcaatgttgacatgtgctttttgtcttttcctggttcccttag

Basic information

species Vitis vinifera
transcript Vv16s0039g00320.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g00320.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G149272_T02 (Zea mays), 5'ss of exon 8
GTAATTAAACAGATGACTGATGGTGGGGCAGATTACTCATTTGAATGTATAGGCGATACTGGAATGGTGACTACTGCATTACAATCATGTTGTGATgtaagtcctgtgactctctgatccatgttttttatgtaaggaagctttacttgtcaatgttgacatgtgctttttgtcttttcctggttcccttag
||||| |||  ||| |||||||| ||||  |||||||||||||||||| | || ||| ||||| | ||  | |||||| | |||||||||| |||||||| | ||     | ||    |  |  |||  ||  | | |  ||| || | ||  | ||  | | |  |  ||  | |||||   || |  |||
GTAATCAAAAGGATTACTGATGGAGGGGTGGATTACTCATTTGAATGTGTGGGTGATTCTGGAGTAGTCTCCACTGCACTTCAATCATGTTCTGATgtaatttct-----tgtcatgccttttgtttccatacatgcatacttcacatatcc-tattcccttctattcatttgcatttccaacttgc--tag

upper sequence: Vv16s0039g00320.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G29070.1 (Glycine max), 5'ss of exon 8
GTAATTAAACAGATGACTGATGGTGGGGCAGATTACTCATTTGAATGTATAGGCGATACTGGAATGGTGACTACTGCATTACAATCATGTTGTGATgtaa-gtcctgtgactctctgatccatgttttttatgtaaggaagctttacttgtcaatgttgacatgtgctttttgtcttttcctggttcccttag
|| ||||| |  || ||||||||||||||||||| ||| ||||||||| |||| || ||||  | | | || |||||||| || ||||| ||||||||||    || | |  || | ||   |  | || |  |    |||||||  ||    ||  |   || | | || | ||||| | || ||| |  ||
GTTATTAAGCGCATTACTGATGGTGGGGCAGATTTCTCGTTTGAATGTGTAGGTGACACTGATACGATAACCACTGCATTGCAGTCATGCTGTGATgtaatactctataaacctataattttttgtgttgacatttaaaagcttttattcattatacttgaattt-cattctatctttccttgtttcacacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110363936|gb|EC927570.1|EC927570
EST:     GTATAGGCGATACTGGAATGGTGACTACTGCATTACAATCATGTTGTGAT                         GGATGGGGTTTGACTGTGACTCTGGGTGTGCCAAAAGTAAATCCAGAAATA
genomic: GTATAGGCGATACTGGAATGGTGACTACTGCATTACAATCATGTTGTGATgtaagtcctg ... gttcccttagGGATGGGGTTTGACTGTGACTCTGGGTGTGCCAAAAGTAAATCCAGAAATA