Sequence
atgc intronic sequence ATGC exonic sequenceGCCAAAGATATTACTGATTTAGGTTCCTTGAAGGAGGCAGCAAAAATCTTTGTCCCAGgtactttgtctcattattttcttccacctttttgcatttcttaggcaaaactttatagcaaaatctttcttcagagggcatagagctgttctaactgatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0128g00030.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G29800.2 (Glycine max), 5'ss of exon 4
GCCAAAGATATTACTGATTTAGGTTCCTTGAAGGAGGCAGCAAAAATCTTTGTCCCAGgtactttgtctcattattttcttccacctttttgcatttcttaggcaaa----actttatagcaaa---atctttct-tcagagggcatagagctgttctaactgatt----------------------------------------------------------------------------------------
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GCTCAGAATATAACTGATTTAGGTTCCCTGAAGGAAGCAGCAAAAATTTTTGTTCCAGgtacaat-tttgtttaaacgtctgcatgtttttgtagttttgaaaagaagttgattttgttctaagtttatctttctgttacagattgttatatcccaacatttagttatttaaatgatattatgtgcttcattgctctttctgtttactcagttcttggttttagtatttcattttgcccatgatgttcatgcag
upper sequence: Vv14s0128g00030.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G37530.1 (Glycine max), 5'ss of exon 5
GCCAAAGATATTACTGATTTAGGTTCCTTGAAGGAGGCAGCAAAAATCTTTGTCCCAGgtactttgtctcattattttcttccacctttttgcatttcttaggcaa--aactttatagcaaaatctttcttcagagggcatagagctgt--tctaac---tgatt----------------------------------------------------------------------------------------
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GCTCAGAATATAACTGATTTAGGTTCTCTGAAGGAAGCAGCAAAAATTTTTGTTCCAGgtacaattttttaaaacgtatacatgtttttgtaggttcagaaagaagttgactttgtt-ctaagtttatctttatgttacagattgttatatcctaacatttagttatttgaatgatatgatgtgcttcgtcactctttctgtttactcagttcttggttttagtatttcattttgctcatgatgtgaatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37190439|gb|CF609788.1|CF609788EST: TATTACTGATTTAGGTTCCTTGAAGGAGGCAGCAAAAATCTTTGTTCCAG CTGCGGCAACTTTGTACTCTGCCCGAACAATAAAAATAAAGGAAGATGACG
genomic: TATTACTGATTTAGGTTCCTTGAAGGAGGCAGCAAAAATCTTTGTCCCAGgtactttgtc ... tccattgcagCTGCGGCAACTTTGTACTCTGCCCGAACAATAAAAATAAAGGAAGATGATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCAAAGATATTACTGATTTAGGTTCCTTGAAGGAGGCAGCAAAAATCTTTGTCCCAGgtactttgtctcattattttcttccacctttttgcatttcttaggcaaaactttatagcaaaatctttcttcagagggcatagagctgttctaactgatt
- - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcaaaa