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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGTCTGCCATAGCAAACACCAAAACTTGGTTTCAGTTCTTTGGTGATGGGTTCTCCATCCGGGTTCCACCTGAGTTTGAGGACATTATGGAGCCTGAGgtgaaaatggtttcacacagttattcttctacattctgtgattgactaaagaattgtttggtagaactgaaaattcaactttctgtgattacaatagcatgaaatttccagtattgaacactgaattgtgatatcaaaaagtccctgtttgactgttttaattttttatgtttctag

Basic information

species Vitis vinifera
transcript Vv14s0128g00030.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0128g00030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA20G37530.1 (Glycine max), 5'ss of exon 1
ACTGTCTGCCATAGCAAACACCAAAACTTGGTTTCAGTTCTTTGGTGATGGGTTCTCCATCCGGGTTCCACCTGAGTTTGAGGACATTATGGAGCCTGAGgtgaaaatggtttcacacagttattcttctacattctgtgattgactaaagaattgtttggtagaactgaaaattcaactttctgtgattacaatagcatgaaatttccagtattgaacactgaattgtgatatcaaaaagtccctgtttgactgttttaattttttatgtttctag
 || |||  | | | |||||| | | |||||||||||||||  |||||||||||  |||| || || ||||| |||||| |||| || ||||| ||||||||| |  |   | |       | |   | |  | | ||| |||  |||||  | |     |||||         | || | | | | |                                                                                         
TCTTTCTAGCTTTGAAAACACGACATCTTGGTTTCAGTTCTACGGTGATGGGTTTGCCATTCGAGTCCCACCAGAGTTTAAGGATATCATGGAACCTGAGgtgcacttaactacttttctctctcaatttttaat-tgtaatttcctaaatgactcaaaagtaga---------ttaattctttattag----------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37190439|gb|CF609788.1|CF609788
EST:     GGTTCTCCATCCGGGTTCCACCTGAGTTTGAGGACATTATGGAGCCTGAG                         GATTTCGATGCTGGATTGTCTCTTTATGGAGATAAGGCAAAGCCCAGGACA
genomic: GGTTCTCCATCCGGGTTCCACCTGAGTTTGAGGACATTATGGAGCCTGAGgtgaaaatgg ... atgtttctagGATTTCAATGCTGGATTGTCTCTTTATGGAGATAAGGCAAAGCCCAGGACA