1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATAGCTGCTGCACAAGCTGGAAAGCATAATGATAAAAGAGAAAGTTATGGAGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTACCTGgtgagaactggttcccttttacactctgatgtctaatctatgatgtgtgcctctactcaaaaaggacaatgagggagcagtgattttatggggaaagaac...
species | Vitis vinifera |
transcript | Vv13s0067g03530.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTACCTG ATCGACTGTCAACAGGCATTGCTGTAGCTGACATTGATTTCTCATTGATTGEST: gi|22009600|gb|BQ794634.1|BQ794634
genomic: AGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTACCTGgtgagaactg ... cgtgtttcagATCGACTGTCAACAGGCATTGCTGTAGCTGACATTGATTTCTCATTGATTG
EST: AGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTACCTG ATCGACTGTCAACAGGCATTGCTGTAGCTGACATTGATTTCTCATTGATTGEST: gi|32248127|gb|CD713946.1|CD713946
genomic: AGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTACCTGgtgagaactg ... cgtgtttcagATCGACTGTCAACAGGCATTGCTGTAGCTGACATTGATTTCTCATTGATTG
EST: TAATAATTGATCCATGGGGAACAATAATTGGCCGTCTACCTG ATCGACTGTCAACAGGCATTGCTGTAGCTGACATTGATTTCTCATTGATTGEST: gi|22008742|gb|BQ793776.1|BQ793776
genomic: TAATAATTGATCCATGGGGAACAATAATTGGCCGTCTACCTGgtgagaactg ... cgtgtttcagATCGACTGTCAACAGGCATTGCTGTAGCTGACATTGATTTCTCATTGATTG
EST: AGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTACCTG ATCGACTGTCAACAGGCATTGCTGTAGCTGACATTGATTTCTCATTGATTGEST: gi|30137154|gb|CB922492.1|CB922492
genomic: AGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTACCTGgtgagaactg ... cgtgtttcagATCGACTGTCAACAGGCATTGCTGTAGCTGACATTGATTTCTCATTGATTG
EST: AGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTACCTG ATCGACTGTCAACAGGCATTGCTGTAGCTGACATTGATTTCTCATTGATTGEST: gi|32457712|gb|CD798886.1|CD798886
genomic: AGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTACCTGgtgagaactg ... cgtgtttcagATCGACTGTCAACAGGCATTGCTGTAGCTGACATTGATTTCTCATTGATTG
EST: AGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTACCTG ATCGACTGTCAACAGGCATTGCTGTAGCTGACATTGATTTCTCATTGATTGEST: gi|46917918|gb|CN547247.1|CN547247
genomic: AGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTACCTGgtgagaactg ... cgtgtttcagATCGACTGTCAACAGGCATTGCTGTAGCTGACATTGATTTCTCATTGATTG
EST: AGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTACCTG ATCGACTGTCAACAGGCATTGCTGTAGCTGACATTGATTTCTCATTGATTGEST: gi|22008729|gb|BQ793763.1|BQ793763
genomic: AGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTACCTGgtgagaactg ... cgtgtttcagATCGACTGTCAACAGGCATTGCTGTAGCTGACATTGATTTCTCATTGATTG
EST: AGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTACCTG ATCGACTGTCAACAGGCATTGCTGTAGCTGACATTGATTTCTCATTGATTG
genomic: AGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTACCTGgtgagaactg ... cgtgtttcagATCGACTGTCAACAGGCATTGCTGTAGCTGACATTGATTTCTCATTGATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGCTGCTGCACAAGCTGGAAAGCATAATGATAAAAGAGAAAGTTATGGAGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTACCTGgtgagaactggttcccttttacactctgatgtctaatctatgatgtgtgcctctactcaaaaaggacaatgagggagcagtgattttatggggaaagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagaa