1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcttggctattttctttaggctttgactcattcatcttgtgtgctatcatgtttgctgctgcttcatttgtgggaatgatgttgatgaatctgctatcagGTCATAGCTGCTGCACAAGCTGGAAAGCATAATGATAAAAGAGAAAGTTATGGAGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTAC
species | Vitis vinifera |
transcript | Vv13s0067g03530.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CACACTGGGAACTTCTTCTTCGTGCTCGTGCAATTGAGACTCAGTGCTAT GTCATAGCTGCTGCACAAGCTGGAAAGCATAATGATAAAAGAGAAAGTTATEST: gi|22009600|gb|BQ794634.1|BQ794634
genomic: CACACTGGGAACTTCTTCTTCGTGCTCGTGCAATTGAGACTCAGTGCTATgtatggaatt ... ctgctatcagGTCATAGCTGCTGCACAAGCTGGAAAGCATAATGATAAAAGAGAAAGTTAT
EST: CACACTGGGAACTTCTTCTTCGTGCTCGTGCAATTGAGACTCAGTGCTAT GTCATAGCTGCTGCACAAGCTGGAAAGCATAATGATAAAAGAGAAAGTTATEST: gi|110719000|gb|EE096473.1|EE096473
genomic: CACACTGGGAACTTCTTCTTCGTGCTCGTGCAATTGAGACTCAGTGCTATgtatggaatt ... ctgctatcagGTCATAGCTGCTGCACAAGCTGGAAAGCATAATGATAAAAGAGAAAGTTAT
EST: CACACTGGGAACTTCTTCTTCGTGCTCGTGCAATTGAGACTCAGTGCTAT GTCATAGCTGCTGCACAAGCTGGAAAGCATAATGATAAAAGAGAAAGTTATEST: gi|46917918|gb|CN547247.1|CN547247
genomic: CACACTGGGAACTTCTTCTTCGTGCTCGTGCAATTGAGACTCAGTGCTATgtatggaatt ... ctgctatcagGTCATAGCTGCTGCACAAGCTGGAAAGCATAATGATAAAAGAGAAAGTTAT
EST: CACACTGGGAACTTCTTCTTCGTGCTCGTGCAATTGAGACTCAGTGCTAT GTCATAGCTGCTGCACAAGCTGGAAAGCATAATGATAAAAGAGAAAGTTAT
genomic: CACACTGGGAACTTCTTCTTCGTGCTCGTGCAATTGAGACTCAGTGCTATgtatggaatt ... ctgctatcagGTCATAGCTGCTGCACAAGCTGGAAAGCATAATGATAAAAGAGAAAGTTAT
atcatgtttgctgctgcttcatttgtgggaatgatgttgatgaatctgctatcagGTCATAGCTGCTGCACAAGCTGGAAAGCATAATGATAAAAGAGAAAGTTATGGAGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTAC
tgttgat putative branch site (score: 4)
ttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttggctattttctttaggctttgactcattcatcttgtgtgctatcatgtttgctgctgcttcatttgtgggaatgatgttgatgaatctgctatcagGTCATAGCTGCTGCACAAGCTGGAAAGCATAATGATAAAAGAGAAAGTTATGGAGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
-cttggct
- - - - - - - - - - - - - ctcattc
- - - - - - - - - - - - - - - - - - -tgtgtgc
- - - - - - - - - - - - - - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - gctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaatga