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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTAATTGGCTTGTTGTCGTTCCACTTTGCCCTGTTGCTAGTAACTTTCTTATCAAGGAAGCATATCAATTTCCAAATGTGCTTGTTCCTTTTGGCATgtaagttttcacacaccattatttcatcctctgttgcatatgtttctttttaattccatttactgttcaatgatctaggttgtgggattatagatttgta...

Basic information

species Vitis vinifera
transcript Vv12s0035g00810.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110377298|gb|EC942362.1|EC942362
EST:     CTTATCAAGGAAGCATATCAATTTCCAAATGTGCTTGTTCCTTTTGGCAT                         TGAGCGGTGTTTATCTTGCTGAGACAATCAATAAATTTCTGGGGAGCAACT
genomic: CTTATCAAGGAAGCATATCAATTTCCAAATGTGCTTGTTCCTTTTGGCATgtaagttttc ... ttttgtgcagTGAGCGGTGTTTATCTTGCTGAGACAATCAATAAATTTCTGGGGAGCAACT
EST: gi|110403121|gb|EC964315.1|EC964315
EST:     CTTATCAAGGAAGCATATCAATTTCCAAATGTGCTTGTTCCTTTTGGCAT                         TGAGCGGTGTTTATCTTGCTGAGACAATCAATAAATTTCTGGGGAGCAACT
genomic: CTTATCAAGGAAGCATATCAATTTCCAAATGTGCTTGTTCCTTTTGGCATgtaagttttc ... ttttgtgcagTGAGCGGTGTTTATCTTGCTGAGACAATCAATAAATTTCTGGGGAGCAACT
EST: gi|26265230|gb|CA816293.1|CA816293
EST:     CTTATCAAGGAAGCATATCAATTTCCAAATGTGCTTGTTCCTTTTGGCAT                         TGAGCGGAGTTTATCTTGCTGAGACAATCAATAAATTTCTGGGGAGCAACT
genomic: CTTATCAAGGAAGCATATCAATTTCCAAATGTGCTTGTTCCTTTTGGCATgtaagttttc ... ttttgtgcagTGAGCGGTGTTTATCTTGCTGAGACAATCAATAAATTTCTGGGGAGCAACT
EST: gi|110688760|gb|EE067680.1|EE067680
EST:     CTTATCAAGGAAGCATATCAATTTCCAAATGTGCTTGTTCCTTTTGGCAT                         TGATCGGTGTTTATCTTGCTGAGACAATCAATAAATTTCTGGGGAGCATCT
genomic: CTTATCAAGGAAGCATATCAATTTCCAAATGTGCTTGTTCCTTTTGGCATgtaagttttc ... ttttgtgcagTGAGCGGTGTTTATCTTGCTGAGACAATCAATAAATTTCTGGGGAGCAACT
EST: gi|161710777|gb|FC059860.1|FC059860
EST:     CTTATCAAGGAAGCATATCAATTTCCAAATGTGCTTGTTCCTTTTGGCAT                         TGATCGGTGTTTATCTTGCTGAGACAATCAATAAATTTCTGGGGAGCATCT
genomic: CTTATCAAGGAAGCATATCAATTTCCAAATGTGCTTGTTCCTTTTGGCATgtaagttttc ... ttttgtgcagTGAGCGGTGTTTATCTTGCTGAGACAATCAATAAATTTCTGGGGAGCAACT
EST: gi|71863226|gb|DT012281.1|DT012281
EST:     CTTATCAAGGAAGCATATCAATTCCCAAATGTGCTTGTTCCTTTTGGCAT                         TGAGCGGTGTTTATCTTGCTGAGACAATCAATAAATTTCTGGGGAGCAACT
genomic: CTTATCAAGGAAGCATATCAATTTCCAAATGTGCTTGTTCCTTTTGGCATgtaagttttc ... ttttgtgcagTGAGCGGTGTTTATCTTGCTGAGACAATCAATAAATTTCTGGGGAGCAACT
EST: gi|26267453|gb|CA818516.1|CA818516
EST:     CTTATCAAGGAAGCATATCAATTTCCAAATGTGCTTGTTCCTTTTGGCAT                         TGAGCGGTGTTTATCTTGCTGAGACAATCAATAAATTTCTGGGGAGCAACT
genomic: CTTATCAAGGAAGCATATCAATTTCCAAATGTGCTTGTTCCTTTTGGCATgtaagttttc ... ttttgtgcagTGAGCGGTGTTTATCTTGCTGAGACAATCAATAAATTTCTGGGGAGCAACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTTAATTGGCTTGTTGTCGTTCCACTTTGCCCTGTTGCTAGTAACTTTCTTATCAAGGAAGCATATCAATTTCCAAATGTGCTTGTTCCTTTTGGCATgtaagttttcacacaccattatttcatcctctgttgcatatgtttctttttaattccatttactgttcaatgatctaggttgtgggattatagatttgta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA