1 5' 3' | 2 5' 3' | 3 5' 3' |
AATGGCGGATCTCGTACAGAAATTCACTGCGGAGCTCCGTACCGGATTCCAGCCTGCTTACGATAATTTCATTGGTTTCTTCCACGCTATCGATTGGAAGgtagtccatctctctctctctctatctatctgggttttttttacacccgagaaaatgcaggaaaattggttttttttttttttttttctaatgctgtgtt...
species | Vitis vinifera |
transcript | Vv12s0035g00810.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCCTGCTTACGATAATTTCATTGGTTTCTTCCACGCTATCGATTGGAAG GAGCCATGGTTAATTGGCTTGTTGTCGTTCCACTTTGCCCTGTTGCTAGTAEST: gi|26265230|gb|CA816293.1|CA816293
genomic: AGCCTGCTTACGATAATTTCATTGGTTTCTTCCACGCTATCGATTGGAAGgtagtccatc ... tttttaacagGAGCCATGGTTAATTGGCTTGTTGTCGTTCCACTTTGCCCTGTTGCTAGTA
EST: AGCCTGCTTACGATAATTTC-TTGGTTTCTTCCACGCTATCGATTGGAAG GAGCCATGGTTAATTGGCTTGTTGTCGTTCCACTTTGCCCTGTTGCTAGTAEST: gi|110688760|gb|EE067680.1|EE067680
genomic: AGCCTGCTTACGATAATTTCATTGGTTTCTTCCACGCTATCGATTGGAAGgtagtccatc ... tttttaacagGAGCCATGGTTAATTGGCTTGTTGTCGTTCCACTTTGCCCTGTTGCTAGTA
EST: AGCCTGCTTACGATAATTTCATTGGTTTCTTCCACGCTATCGATTGGAAG GAGCCATGGTTAATTGGCTTGTTGTCGTTCCACTTTGCCCTGTTGCTAGTAEST: gi|161710777|gb|FC059860.1|FC059860
genomic: AGCCTGCTTACGATAATTTCATTGGTTTCTTCCACGCTATCGATTGGAAGgtagtccatc ... tttttaacagGAGCCATGGTTAATTGGCTTGTTGTCGTTCCACTTTGCCCTGTTGCTAGTA
EST: AGCCTGCTTACGATAATTTCATTGGTTTCTTCCACGCTATCGATTGGAAG GAGCCATGGTTAATTGGCTTGTTGTCGTTCCACTTTGCCCTGTTGCTAGTAEST: gi|71863226|gb|DT012281.1|DT012281
genomic: AGCCTGCTTACGATAATTTCATTGGTTTCTTCCACGCTATCGATTGGAAGgtagtccatc ... tttttaacagGAGCCATGGTTAATTGGCTTGTTGTCGTTCCACTTTGCCCTGTTGCTAGTA
EST: AGCCTGCTTACGATAATTTCATTGGTTTCTTCCACGCTACCGATTGGAAG GAGCCATGGTTAATTGGCTTATTGTCGTTCCACTTTGCCCTGTTGCTAGTA
genomic: AGCCTGCTTACGATAATTTCATTGGTTTCTTCCACGCTATCGATTGGAAGgtagtccatc ... tttttaacagGAGCCATGGTTAATTGGCTTGTTGTCGTTCCACTTTGCCCTGTTGCTAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGCGGATCTCGTACAGAAATTCACTGCGGAGCTCCGTACCGGATTCCAGCCTGCTTACGATAATTTCATTGGTTTCTTCCACGCTATCGATTGGAAGgtagtccatctctctctctctctatctatctgggttttttttacacccgagaaaatgcaggaaaattggttttttttttttttttttctaatgctgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaaa