Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGATTGGCCAAGCTCTTGGGCTCAGGTGAAAGCCACATAACGACTAGAGTAATGGGAACATTTGGgtatgtttatatgttcatcttaagtcccctttagtctttatagtttttccacctgtatgatataaattttttatgagagcctcagaacctgacatcttttctctggatttcag

Basic information

species Vitis vinifera
transcript Vv12s0028g00310.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g44110.1 (Oryza sativa), 5'ss of exon 6
TTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGATTGGCCAAGCTCTTGGGCTCAGGTGAAAGCCACATAACGACTAGAGTAATGGGAACATTTGGgtatgtttatatgttcatcttaagtcccctttagtctttatagtttttccacctgtatgatataaattttttatgagagcctcagaacctgacatcttttctctggatttcag
||||||| || || ||||  ||||| ||||| ||||||||||||||||| ||||| || | | |||||||||| || |||||||| |||||||||||||||||| ||  | || |         |    | || || ||    |  ||     ||| ||  |||      ||   ||     ||  |  |  ||||  ||||      || ||
TTGATGAGGAATTTAATGGCAAGGTCTCTGACTTTGGATTGGCCAAGCTTTTGGGGTCTGATAAAAGCCACATTACTACTAGAGTGATGGGAACATTTGGgtattttcctctgctagctacccattatttgtactcatttgcatcctt-----tgtttgccata------tttcaaggagtacaataattctcatccattcttcttgatttag

upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G017386_T03 (Zea mays), 5'ss of exon 5
TTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGATTGGCCAAGCTCTTGGGCTCAGGTGAAAGCCACATAACGACTAGAGTAATGGGAACATTTGGgtatgtttatatgttcatcttaagtcccctttagtctttatagtttttccacctgtatgatataaattttttatgagagcctcagaacctgacatcttttctctggatttcag
|||||||||| || ||||  || || ||||| ||||||||||| || || ||||| ||||   |||||||||| || |||||||| ||||||||||||||||||  || | | |||    |||   ||| |   |  | ||    |||    || ||  ||    | || |    ||||  | |    |   ||||  || |      |||||
TTGATGATGAATTTAATGGCAAAGTATCTGACTTTGGATTGGCTAAACTTTTGGGATCAGACAAAAGCCACATTACTACTAGAGTGATGGGAACATTTGGgtattattcttttttc----taa---cccatacctgctcatttgctttgtgtctttacaatg---acttat----agagtttaactttcct-catccatttttcttgcttcag

upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G026301_T01 (Zea mays), 5'ss of exon 5
TTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGATTGGCCAAGCTCTTGGGCTCAGGTGAAAGCCACATAACGACTAGAGTAATGGGAACATTTGGgtatgtttatatgttcatcttaagtcccctttagtctttatagtttttccacctgtatgatataaattttttatgagagcctcagaacct---gacatct-tttctctggatttcag------------------------------------------------------------------------
||||||| || |||||||  ||| |||||||||||||||||||||||||||||||  ||||  | || || || || ||| |||| |||||||| || |||||||||  |   || || ||   ||   |||    |   | | ||  | | ||| |  || |    ||    |  || |||    |  |   |  || | ||| ||  | ||| ||                                                                        
TTGATGAAGAATTCAATGGCAAGCTTTCTGATTTTGGATTGGCCAAGCTCTTGGGTGCAGGGAAGAGTCATATCACAACTCGAGTTATGGGAACTTTCGGgtatgttgtttgcttgatattctttcatttttgtagtaccttgcttgactaactggaacatgtggtattacagtaggaacctttacatgttgagggatttgtttttcatgtttttagagcagtataaagttttgtggtgcttcacatgacatgaaaagaaccattcaccttttgttgctactgtttcag

upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G010953_T01 (Zea mays), 5'ss of exon 3
TTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGATTGGCCAAGCTCTTGGGCTCAGGTGAAAGCCACATAACGACTAGAGTAATGGGAACATTTGGgtatgt----ttatatgttcatcttaagtcccctttagtctttatagtttttccacctgtatgatataaattttttatgagagcctcagaacctgacatcttttctctggatttcag-----------------------------------------------------------
||||||| || |||||||  ||| |||||||||||||| ||||||||||||||||  | ||  | ||||| || || ||  |||| ||||| ||||| ||||||||    ||||  |  |||    |      | |  |||| |     |    |||||||   | |  |       |  ||   | | |  | ||  | | || ||    ||| |                                                            
TTGATGAAGAATTCAATGGCAAGCTTTCTGATTTTGGACTGGCCAAGCTCTTGGGTGCTGGGAAGAGCCATATCACAACGCGAGTTATGGGCACATTCGGgtatgtttttttatgggaacattccgaaatatgtcttttcttcactaactgga-acctgta--gtcttcacacgcagtaggaagtttacatacagagctttgttttccaatttttaagaagaattagctctgcaggggaagcaaccattcatctttttatttcaccacggtttcag

upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA14G03290.1 (Glycine max), 5'ss of exon 4
TTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGATTGGCCAAGCTCTTGGGCTCAGGTGAAAGCCACATAACGACTAGAGTAATGGGAACATTTGGgtatgtttata--tgttcatcttaagtcccctttagtctttatagtttttccacctgtatgatataaattttttatgagagcctcagaacctgacatcttttctctggatttcag
|||||||||| |||||||||||||||||||||||||| |||||||| || ||||  ||||| ||||| |||||||| ||||||||||||||||| |||||||||    | |  |  | ||||     |   |||  |  ||| ||  |||  ||   || ||  | | |||| | |  ||   ||||                            
TTGATGATGAATTCAATGCAAAGGTTTCTGATTTTGGTTTGGCCAAACTTTTGGATTCAGGCGAAAGTCACATAACCACTAGAGTAATGGGAACGTTTGGgtatacagaaaatttattatctctttccttattttatacttaaaggatttgtacacttaggaactcacttttgttttgga-tttcag----------------------------

upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G12830.1 (Glycine max), 5'ss of exon 4
TTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGATTGGCCAAGCTCTTGGGCTCAGGTGAAAGCCACATAACGACTAGAGTAATGGGAACATTTGGgtatgtttatatgttcatcttaagtcccctttagtctttatagtttttccacctgtatgatataaattttttatgagagcctcagaacctgacatcttttctctggatttcag-
 ||||  |||||||||||||||||||||||| ||||| |||||||| || ||||  ||||| ||||| ||||| || ||||||||||||||||||||||||||||   || | |   | |  | |   ||     |||||||| ||||  |  |  | |||     |   | |  |||  || |   |||        |  ||   ||||||| 
-TGATACTGAGTTCAATGCAAAGGTTTCTGACTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATTACTACTAGAGTAATGGGAACATTTGGGtatgcacatgtttcagtatctacttgacta----ctttatagatttt--atttaaaggat-----tgcataaatagaaacttatt-cctattggacctgttcccaatttcagt

upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G45540.1 (Glycine max), 5'ss of exon 6
TTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGATTGGCCAAGCTCTTGGGCTCAGGTGAAAGCCACATAACGACTAGAGTAATGGGAACATTTGGgtatgtttata--tgttcatcttaagtcccctttagtctttatagtttttccacctgtatgatataaattttttatgagagcctcagaacctgacatcttttctctggatttcag
|||| ||||| ||||||||||||||||||||||||||  ||||||| || ||||  ||||| ||||| |||||||| ||||||||||||||||| |||||||||    | |  |  | ||||     |   |||  |  ||| ||  |||   |   || ||  | | || | | || |    ||||                            
TTGACGATGAATTCAATGCAAAGGTTTCTGATTTTGGTCTGGCCAAACTTTTGGATTCAGGCGAAAGTCACATAACCACTAGAGTAATGGGAACGTTTGGgtatacagaaaatttattatctctttccttattttttacttaaaggatttatgcacttaggaactcacttctgt-tgtggatttcag----------------------------

upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G42170.2 (Glycine max), 5'ss of exon 4
TTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGATTGGCCAAGCTCTTGGGCTCAGGTGAAAGCCACATAACGACTAGAGTAATGGGAACATTTGGgtatgtttatatgttcatcttaagtcccctttagtctttatagtttttccacctgtatgatataaattttttatgagagcctcagaacctgacatcttttctctggatttcag
|||||  ||| |||||||||||||||||||| ||||| |||||||| || ||||  ||||| ||||| ||||| || ||||||||||||||||||||||||||||   | |||||     | |||  |   ||     ||||| ||||  |  |  | |||   |    || ||   | | |    |  |   | || ||| |   |||||||
TTGATACTGATTTCAATGCAAAGGTTTCTGACTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATTACTACTAGAGTAATGGGAACATTTGGgtatgcaga-atgtt-----tcagtatctacta-----tatagatttt--atttaaaggattgca----ttaatagaaacttactcatgttggacctgttccc--aatttcag

upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 5
TTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGATTGGCCAAGCTCTTGGGCTCAGGTGAAAGCCACATAACGACTAGAGTAATGGGAACATTTGGgtatgtttatatgttcatcttaagtcccctttagtctttatag-tttttccacctgtatgat-ataaattttttatgagagcctcagaacctgacatcttttctctggatttcag
|||| ||||| |||||||||||| ||||||||||||| |||||||||||||| | ||| ||||| || ||||| ||||| ||||| |||||||| |||||||| || || |        ||    || |||| ||  | || | |||||  |    ||| || |    |  | | |    || ||||                            
TTGACGATGACTTCAATGCAAAGCTTTCTGATTTTGGGTTGGCCAAGCTCTTAGACTCGGGTGAGAGTCACATCACGACCAGAGTCATGGGAACCTTTGGgtaagtctaaaa------tttgtaccctctttggtgatgatgggtttttgtatacatattattaacggtcatgtgtatatgcatcag----------------------------

upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT2G42960.1 (Arabidopsis thaliana), 5'ss of exon 4
TTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGATTGGCCAAGCTCTTGGGCTCAGGTGAAAGCCACATAACGACTAGAGTAATGGGAACATTTGGgtat-gtttatatgttcatcttaagtcccctttagtctttatagtttttccacctgtatgatataaattttttatgagagcctcagaacctgacatcttttctctggatttcag
||||||||||||| ||||||||  | ||||| ||||| || ||||||||||||| ||| ||||| || ||||| || || ||||| ||||| || ||||||||  ||  | |  ||  |    |  | |||   | | |||  ||| ||       | | | || |  |  |||  |     |||     ||   | |||  | | | ||||||
TTGATGATGAGTTTAATGCAAAACTCTCTGACTTTGGGTTAGCCAAGCTCTTGGACTCGGGTGAGAGTCACATCACTACCAGAGTCATGGGTACCTTTGGgtaaagtccaaaactttgt----accctcctcaggccattaaggttattattatcttctcagatgatgtccttacaaagaaatcattga-tgttgtttttgttattgttttcag