Sequence
atgc intronic sequence ATGC exonic sequenceACAATGGCAACTTAGAACAGTGGCTTCATGGAGCTATGCGCCAATATGGCAACCTTACTTGGGAGGCCCGCATGAAGGTTATTCTTGGTACAGCCAAGGCgtaagtccatctctcaactgaaaatagtgtcatcattaagatttgcgttactagaaccgagattaatataggcaattacctcctctatttctatgaaatc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os10g35450.1 (Oryza sativa), 5'ss of exon 4
ACAATGGCAACTTAGAACAGTGGCTTCATGGAGCTATGCGCCAATATGGCAACCTTACTTGGGAGGCCCGCATGAAGGTTATTCTTGGTACAGCCAAGGCgtaagt------ccatc-tctcaactgaaaatagtgtcatcattaagatttgcgttactagaaccgagattaatataggcaattacctcctctatttctatgaaatc---------
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ATAACGGGAACTTAGAACAGTGGCTTCATGGTGCCATGCGCCAACATGGTGTTCTTACCTGGGAAGCCCGAATGAAAGTTGTTCTTGGAATTGCTAAAGCgtaagaaacaaaccatcgtccccgtcaaaaagaaaagaattgttcttcactttagctcttttatatgtatatgtttagttgcataacccattttccataactgaattggtatacag
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g44110.1 (Oryza sativa), 5'ss of exon 5
ACAATGGCAACTTAGAACAGTGGCTTCATGGAGCTATGCGCCAATATGGCAACCTTACTTGGGAGGCCCGCATGAAGGTTATTCTTGGTACAGCCAAGGCgtaagtccatctctcaactgaaaatagtgtcatcattaagatttgcgttactagaaccgagattaatataggcaattacctcctctatttctatgaaatc
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ATAACGGTAACTTGGAGCAGTGGCTTCATGGAGCTATGCGCCAGCATGGTGTTTTTAGCTGGGAAAATCGTATGAAGGTTGTTATCGGCACTGCAAAAGCgtaagtttcatcagcttctcagtcta-taagatacatgttgtttctgttgtcggaatttgtttgatgatattttggcgggttaatcatgatcacag----
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G010953_T01 (Zea mays), 5'ss of exon 2
ACAATGGCAACTTAGAACAGTGGCTTCATGGAGCTATGCGCCAATATGGCAACCTTACTTGGGAGGCCCGCATGAAGGTTATTCTTGGTACAGCCAAGGCgtaagtccatctctcaactgaaaatagtgtcatcattaagatt--tgcgttactagaaccgagattaatataggcaattacctcctctatttctatgaaatc
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ATAATGGGAACTTAGAACAGTGGCTTCATGGTGCAATGCGTCAGCACGGTGTTCTTACTTGGGAGGCCCGGATGAAAGTCGTTCTTGGAATTGCCAAGGCgtaagaa-atgaaaccattcacaattttg-catcttttatatgcatacatttattaaattaagat-gttgtctacaactgaacactatacag----------
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G017386_T03 (Zea mays), 5'ss of exon 4
ACAATGGCAACTTAGAACAGTGGCTTCATGGAGCTATGCGCCAATATGGCAACCTTACTTGGGAGGCCCGCATGAAGGTTATTCTTGGTACAGCCAAGGCgtaagtccatctctcaa-ctgaaaatagtgtcatcattaagatttgcgttactagaaccgagattaatataggcaattacctcctctatttctatgaaatc--
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ACAATGGTAATTTAGAGCAGTGGCTTCATGGAGCTATGCATCAGCGTGGTGTTTTTAGCTGGGAAAATCGCATGAAGGTTGTAACAGGCACTGCAAAAGCgtaagtttcaatcttaatctgtaagt--tacctacatagtttcctgtgtttttag--ctgta--taaaattggttcttatttttctaattatgatggttgcag
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G026301_T01 (Zea mays), 5'ss of exon 4
ACAATGGCAACTTAGAACAGTGGCTTCATGGAGCTATGCGCCAATATGGCAACCTTACTTGGGAGGCCCGCATGAAGGTTATTCTTGGTACAGCCAAGGCgtaagtccatctctcaactgaaaata-gtgtcatcattaagatttgcgttactagaaccgag--attaatataggcaattacctcctctatttctatgaaatc
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ACAATGGAAATTTAGAACAGTGGCTTCATGGTGCCATGCGTCAGCATGGTGTTCTTACTTGGGAAGCCCGGATGAAAATCATTCTTGGAATTGCTAAGGCgtaagac-atggaccattcaatattttgtctcttctttgatgcatatgttttgccatctaaggcatttttataattgatgatatactacag------------
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G03290.1 (Glycine max), 5'ss of exon 3
ACAATGGCAACTTAGAACAGTGGCTTCATGGAGCTATGCGCCAATATGGCAACCTTACTTGGGAGGCCCGCATGAAGGTTATTCTTGGTACAGCCAAGGCgtaagtccatctctcaactgaaaata-gtgtcatcattaagatttgcgttactagaaccgagattaatataggcaattacctcc--tctatt-tctatgaaatc
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ACAATGGTAACTTAGAACAATGGTTACATGGAGACATGCATCAATATGGAACACTTACCTGGGAGGCCCGCATGAAAGTTATACTTGGCACTGCCAAAGCgtaagttcagggtgcaacttaaaatatataccatggtaatcttttgtataatctggtgccaaatcactcggtataattatcataaatctctcatctctga----
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G45540.1 (Glycine max), 5'ss of exon 5
ACAATGGCAACTTAGAACAGTGGCTTCATGGAGCTATGCGCCAATATGGCAACCTTACTTGGGAGGCCCGCATGAAGGTTATTCTTGGTACAGCCAAGGCgtaagtccatctctcaactgaaaata-gtgtcatcattaagatttgcgttactagaaccgagattaatataggcaattacctcc--tctatt-tctatgaaatc
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ACAATGGTAACTTAGAACAATGGTTACATGGAAACATGCACCAATATGGGACGCTTACCTGGGAGGCCCGCATGAAAGTTATACTTGGCACTGCCAAAGCgtaagttcagggtgcaacttaaaatatataccatggtaatcatttgtatagtctggtgccaaatcactcagtataattatcatgaatctctcatctctga----
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G42170.2 (Glycine max), 5'ss of exon 3
ACAATGGCAACTTAGAACAGTGGCTTCATGGAGCTATGCGCCAATATGGCAACCTTACTTGGGAGGCCCGCATGAAGGTTATTCTTGGTACAGCCAAGGCgtaagtccatctctcaa---ctgaaaatagtgtcatcattaagatttgcgttactagaaccgagattaatataggcaattacctcctctatttctatgaaatc---
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ACAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGACACTTACCTGGGAAGCCCGGATGAAAGTTATAACTGGAACAGCCAAAGCgtaagttctactagaaaaattcaaacagaggacaacatttattatttatgttgacttgtgcaaaattggtttgttta------tactgtgattgtcttgaatccct
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G12830.1 (Glycine max), 5'ss of exon 3
ACAATGGCAACTTAGAACAGTGGCTTCATGGAGCTATGCGCCAATATGGCAACCTTACTTGGGAGGCCCGCATGAAGGTTATTCTTGGTACAGCCAAGGCgtaagtccatctctcaa---ctgaaaatagtgtcatcattaagatttgcgtt-actagaaccga---gattaatataggcaattacctcctctatttctatgaaatc
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-CAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGACACTTACCTGGGAAGCTCGAATGAAAGTTATAACTGGAACAGCCAAAGCGtaagttctacttgaaaaattcaaacagaggacaacatttattagttatgttgacttgtgcaaaattggtttatatgaattgtgattgtcttgaatccctt------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71875365|gb|DT024420.1|DT024420EST: AACCTTACTTGGGAGGCCCGCATGAAGGTTATTCTTGGTACAGCCAAGGC GCTTGCCTATTTGCATG
genomic: AACCTTACTTGGGAGGCCCGCATGAAGGTTATTCTTGGTACAGCCAAGGCgtaagtccat ... tgggttgcagGCTTGCCTATTTGCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAATGGCAACTTAGAACAGTGGCTTCATGGAGCTATGCGCCAATATGGCAACCTTACTTGGGAGGCCCGCATGAAGGTTATTCTTGGTACAGCCAAGGCgtaagtccatctctcaactgaaaatagtgtcatcattaagatttgcgttactagaaccgagattaatataggcaattacctcctctatttctatgaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgaaa