Sequence
atgc intronic sequence ATGC exonic sequence...attatttgtcctgagaatcaaataaaattattcttcttggaaatgatacatattcttctagcatgggttgatctgattttcttattgtgtatgactgaagCTTTCAAAAGATGTCCCAAAATACATGATGGTGTCTGGAGAAAGAGCTGAGCTCCGTGGTTTGAATTTTGAGGGTCTTCGACGTCGTGGATTCTCAGACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g02420.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G15460.1 (Glycine max), 3'ss of exon 6
--attatttgtcctga-gaatcaaataaaattattcttcttggaaatgatacatattcttctagcatgggttgatctgattttcttattgtgtatgactgaagCTTTCAAAAGATGTCCCAAAATACATGATGGTGTCTGGAGAAAGAGCTGAGCTCCGTGGTTTGAATTTTGAGGGTCTTCGACGTCGTGGATTCTCAGACA
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ttattgaagaacttgttaaaacaaatacttttacaatgcc--aaattgatttacatctactcag-gtgcgcaactacattgtcatgttcttacataaatgaagGTTTCACAAGATGTCCCAAAGTACATGATGGTAGCCGGAGAAAGAGCTGAGCTTCGTGGTCTAAATGTAGTGGGCCTTACTCGATGTGGATTCAGCATTG
upper sequence: Vv11s0016g02420.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G00620.1 (Glycine max), 3'ss of exon 5
--attatttgtcctga-gaatcaaataaaattattcttcttggaaatgatacatattcttctagcatgggttgatctgattttcttattgtgtatgactgaagCTTTCAAAAGATGTCCCAAAATACATGATGGTGTCTGGAGAAAGAGCTGAGCTCCGTGGTTTGAATTTTGAGGGTCTTCGACGTCGTGGATTCTCAGACA
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ttattgaagaacttgttaagacaaatacttttacaatgcc--aaattgatttacaactactcag-gtgtgcaactacattttcatgttcttacacaaatgaagGTTTCACAATATGTCCCAAAGTACATGATGGCAGCCGGAGAAAGAGCTGAGCTTCGTGGTCTAAATTTAGTCGGCCTTACTCGATGTGGATTCAGCGTTG
upper sequence: Vv11s0016g02420.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G29540.2 (Arabidopsis thaliana), 3'ss of exon 7
attatttgtcctgagaatcaaataaaattattcttcttggaaatgatacatattcttctagcatgggttgatctgattttcttattgtgtatgactgaagCTTTCAAAAGATGTCCCAAAATACATGATGGTGTCTGGAGAAAGAGCTGAGCTCCGTGGTTTGAATTTTGAGGGTCTTCGACGTCGTGGATTC-TCAGACA
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-----------------------gtaaattttcctctaatacctctcaaatgtcctcatttccaacagttactcactggtacggtaatatat------agGTCTCACAAGATGTTCCAAAGTACATGATGGTGGCTGGAGAAAGAGCCGAACTTCGCGGTTTGAATCTGGAGGGACTTAGACGAAATGGATTTACCATGT- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atacatattcttctagcatgggttgatctgattttcttattgtgtatgactgaagCTTTCAAAAGATGTCCCAAAATACATGATGGTGTCTGGAGAAAGAGCTGAGCTCCGTGGTTTGAATTTTGAGGGTCTTCGACGTCGTGGATTCTCAGACA
atctgat putative branch site (score: 4)
attttcttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attatttgtcctgagaatcaaataaaattattcttcttggaaatgatacatattcttctagcatgggttgatctgattttcttattgtgtatgactgaagCTTTCAAAAGATGTCCCAAAATACATGATGGTGTCTGGAGAAAGAGCTGAGCTCCGTGGTTTGAATTTTGAGGGTCTTCGACGTCGTGGATTCTCAGACA
- - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - -ttcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatggg