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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgccaatatggaagatgatttttttttttcctcaaagttacagactggtaaatcaagttcatgctatttcaattttttaactagcactacattatcagGTCATTGGTGATAACAATCTTATTATGGGATCTTGTCATATTGCCCATGACTGCAAATTGGGTAACAACAATATTTTTGCAAATAATACCCTTCTAGCAG

Basic information

species Vitis vinifera
transcript Vv11s0016g02420.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g02420.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G15460.1 (Glycine max), 3'ss of exon 4
gtatgccaatatggaagatgatttttttttttcctcaaag---ttacagactggtaaatcaagttcatgc---tatttcaattttttaactagcactacattatcagGTCATTGGTGATAACAATCTTATTATGGGATCTTGTCATATTGCCCATGACTGCAAATTGGGTAACAACAATATTTTTGCAAATAATACCCTTCTAGCAG
||| |    |        | | ||||||        |||    | | |   |    | ||||   |||       |||  || || | || |  |  | || ||||||| |||||| ||  |||| |||| |||||||||||||||||||||||||| |||||  | |||||||||||||||||||| || ||||| || ||||| |
gtaagaagttggcttcagtaacttttttacagaaaaaaaaacctcagaatttttagactcaaaaacatatataccttttcatattctcaccatgatcatatgatcagGTTATTGGTAATGCCAATTTTATAATGGGATCTTGTCATATTGCCCATGATTGCAAGATTGGTAACAACAATATTTTTGCGAACAATACTCTCCTAGCTG

upper sequence: Vv11s0016g02420.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G00620.1 (Glycine max), 3'ss of exon 3
gtatgccaatatggaagatgattttttttttt------cctca-aagttacagactggtaaatcaagttcatgctatttcaattttttaactagcactacattatcagGTCATTGGTGATAACAATCTTATTATGGGATCTTGTCATATTGCCCATGACTGCAAATTGGGTAACAACAATATTTTTGCAAATAATACCCTTCTAGCAG
||| |   ||        | ||||||| |         ||||| || ||  ||||   ||||   | |  |  |  ||||| | || | || |  |  | || || |||| |||||| ||  |||| |||| |||||||||||||||||| ||||||| |||||  | ||||||||||||||| |||| || ||||| |||||||| |
gtaagaagatggcttcagtaattttttatagaaaaaaacctcagaatttttagacacataaaggca-tatacaccttttca-tattctcaccatgatcatatgattagGTTATTGGTAATGCCAATTTTATAATGGGATCTTGTCATATTACCCATGATTGCAAGATTGGTAACAACAATATTCTTGCCAACAATACTCTTCTAGCTG

upper sequence: Vv11s0016g02420.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT4G29540.2 (Arabidopsis thaliana), 3'ss of exon 5
gtatgccaatatggaagatgatttttttttttcctcaaagttacagactggtaaatcaagttcatgctatttcaattttttaactagcactacattatcagGTCATTGGTGATAACAATCTTATTATGGGATCTTGTCATATTGCCCATGACTGCAAATTGGGTAACAACAATATTTTTGCAAATAATACCCTTCTAGCAG
        || | |  ||  ||| | |  | || |  ||||| ||    | |  |||| |||        || | ||     |  |  | |||   | ||||| |||||||| |||||||| || ||||| ||||||||||| |||||||| || ||  | ||| ||  ||| || ||||| || ||||| ||||| || |
------gtatgtagctgaccattgtctaatatcattgaagtttcaataggttgtatcatgtt--------ttgagtt-----atgattattactggaacagGTTATTGGTGACAACAATCTAATCATGGGTTCTTGTCATATCGCCCATGATTGTAAGATTGGTGACCGCAACATATTTGCCAACAATACGCTTCTTGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actggtaaatcaagttcatgctatttcaattttttaactagcactacattatcagGTCATTGGTGATAACAATCTTATTATGGGATCTTGTCATATTGCCCATGACTGCAAATTGGGTAACAACAATATTTTTGCAAATAATACCCTTCTAGCAG
                               ttttaac  putative branch site (score: 2)
                     tatttcaattttttaa  TA-rich tract