1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctctcaacactttaggcagctatgccttttggctgccttttatattgcattatggtgctgagtattttcttgatccatttcttgcctttattttctgaagGGAATGCTGGAGAATGCTGACAAAGACAGAATCAGGAGACTGACAAGGTTGAAACCTCCAACTGAGTTCTGAACTTGAAGCATCTGCCCATCATCGGCCT
species | Vitis vinifera |
transcript | Vv09s0002g06730.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGATAAGTACGGAAAGATATGCTTATGTCTGGACGAAATTGTTTGGAAG GGAATGCTGGAGAATGCTGACAAAGACAGAATCAGGAGACTGACAAGGTTGEST: gi|352777162|gb|FQ474469.1|FQ474469
genomic: TTGATAAGTACGGAAAGATATGCTTATGTCTGGACGAAATTGTTTGGAAGgtgaggggat ... ttttctgaagGGAATGCTGGAGAATGCTGACAAAGACAGAATCAGGAGACTGACAAGGTTG
EST: TTGATAAGTACGGAAAGATATGCTTATGTCTGGACGAAATTGTTTGGAAG GGAATGCTGGAGAATGCTGACAAAGACAGAATCAGGAGACTGACAAGGTTGEST: gi|37190163|gb|CF609512.1|CF609512
genomic: TTGATAAGTACGGAAAGATATGCTTATGTCTGGACGAAATTGTTTGGAAGgtgaggggat ... ttttctgaagGGAATGCTGGAGAATGCTGACAAAGACAGAATCAGGAGACTGACAAGGTTG
EST: TTGATAAGTACGGAAAGATATGCTTATGTCTGGACGAAATTGTTTGGAAG GGAATGCTGGATAATGCTGACAAAGACAGAATCAGGAGACTGACAAGGTTG
genomic: TTGATAAGTACGGAAAGATATGCTTATGTCTGGACGAAATTGTTTGGAAGgtgaggggat ... ttttctgaagGGAATGCTGGAGAATGCTGACAAAGACAGAATCAGGAGACTGACAAGGTTG
tgcattatggtgctgagtattttcttgatccatttcttgcctttattttctgaagGGAATGCTGGAGAATGCTGACAAAGACAGAATCAGGAGACTGACAAGGTTGAAACCTCCAACTGAGTTCTGAACTTGAAGCATCTGCCCATCATCGGCCT
tcttgat putative branch site (score: 4)
tccatttcttgccttt CT-rich tract
tttattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctcaacactttaggcagctatgccttttggctgccttttatattgcattatggtgctgagtattttcttgatccatttcttgcctttattttctgaagGGAATGCTGGAGAATGCTGACAAAGACAGAATCAGGAGACTGACAAGGTTGAAACCTCCAACTGAGTTCTGAACTTGAAGCATCTGCCCATCATCGGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
ctctcaa
- - - - - - - - - -ctatgcc
- - - - - - - - - - - - - - - -gctgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - tggtgct