1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgaatgaatgaatagctttgcttcagaaatgactgctgaatttgatcatgtatggtaagattgttgaattactgatttaaggtttatgctgtattgcagATTTAGTGGAGTCCCAGCAGAAGAACGGCTGCATTGGAGATCTTTCTTGGTTAAATTGGGAGCGGACAATCTTAAAGGCGTAAAAAATGAGGAGCTTCTT
species | Vitis vinifera |
transcript | Vv09s0002g06730.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCTGGCGGTTCTATTCGCCAACTCAGAAGGCAACATATTAGTCGAACG ATTTAGTGGAGTCCCAGCAGAAGAACGGCTGCATTGGAGATCTTTCTTGGTEST: gi|352777162|gb|FQ474469.1|FQ474469
genomic: CTGCTGGCGGTTCTATTCGCCAACTCAGAAGGCAACATATTAGTCGAACGgtacgccgga ... tgtattgcagATTTAGTGGAGTCCCAGCAGAAGAACGGCTGCATTGGAGATCTTTCTTGGT
EST: CTGCTGGCGGTTCTATTCGCCAACTCAGAAGGCAACATATTAGTCGAACG ATTTAGTGGAGTCCCAGCAGAAGAACGGCTGCATTGGAGATCTTTCTTGGTEST: gi|37190163|gb|CF609512.1|CF609512
genomic: CTGCTGGCGGTTCTATTCGCCAACTCAGAAGGCAACATATTAGTCGAACGgtacgccgga ... tgtattgcagATTTAGTGGAGTCCCAGCAGAAGAACGGCTGCATTGGAGATCTTTCTTGGT
EST: CTGCTGGCGGTTCTATTCGCCAACTCAGAAGGCAACATATTAGTCGAACG ATTTAGTGGAGTCCCAGCAGAAGAACGGCTGCATTGGAGATCTTTCTTGGT
genomic: CTGCTGGCGGTTCTATTCGCCAACTCAGAAGGCAACATATTAGTCGAACGgtacgccgga ... tgtattgcagATTTAGTGGAGTCCCAGCAGAAGAACGGCTGCATTGGAGATCTTTCTTGGT
atcatgtatggtaagattgttgaattactgatttaaggtttatgctgtattgcagATTTAGTGGAGTCCCAGCAGAAGAACGGCTGCATTGGAGATCTTTCTTGGTTAAATTGGGAGCGGACAATCTTAAAGGCGTAAAAAATGAGGAGCTTCTT
tactgat putative branch site (score: 2)
aattactgatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaatgaatgaatagctttgcttcagaaatgactgctgaatttgatcatgtatggtaagattgttgaattactgatttaaggtttatgctgtattgcagATTTAGTGGAGTCCCAGCAGAAGAACGGCTGCATTGGAGATCTTTCTTGGTTAAATTGGGAGCGGACAATCTTAAAGGCGTAAAAAATGAGGAGCTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - -aatgaata
- - - - - - - - - -tgcttca
- - - - - - - - - - - - - - - - actgctg
- - - - - - - - - - - - - - - - - - - - - - - tcatgta