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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTCTTGAACATCAACCTGTTTGGCGACCCCAAAGGGGACTTCCTGAGCGAGCTGTAACTGTACTCAGGGCATGGTTGTTTGAACACTTCCTTCACCCgtgagtaatttaattttttaaccaacatgcaaaaataataatcgtgtgagttcattttatgctttcaataaacatgtattctgtttatatatttatcattttttcttttgttgttaggcagtgcatgtacatgttgatatctatgtatatgaagcttctgagataattcaattgttgttttgtgtttcag

Basic information

species Vitis vinifera
transcript Vv08s0007g01290.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34546190|gb|CF514422.1|CF514422
EST:     CGAGCTGTAACTGTACTCAGGGCATGGTTGTTTGAACACTTCCTTCACCC                         TTATCCTACTGATACAGACAAGCTAATGTTGGCTAAGCAGACTGGTCTCTC
genomic: CGAGCTGTAACTGTACTCAGGGCATGGTTGTTTGAACACTTCCTTCACCCgtgagtaatt ... tgtgtttcagTTATCCTACTGATACAGACAAGCTAATGTTGGCTAAGCAGACTGGTCTCTC
EST: gi|110718024|gb|EE094393.1|EE094393
EST:     CGAGCTGTAACTGTACTCAGGGCATGGTTGTTTGAACACTTCCTTCACCC                         TTATCCTACTGATACAGACAAGCTAATGTTGGCTAAGCAGACTGGTCTCTC
genomic: CGAGCTGTAACTGTACTCAGGGCATGGTTGTTTGAACACTTCCTTCACCCgtgagtaatt ... tgtgtttcagTTATCCTACTGATACAGACAAGCTAATGTTGGCTAAGCAGACTGGTCTCTC
EST: gi|110699383|gb|EE076333.1|EE076333
EST:     CGAGCTGTAACTGTACTCAGGGCATGGTTGTTTGAACACTTCCTTCACCC                         TTATCCTACTGATACAGACAAGCTAATGTTGGCTAAGCAGACTGGTCTCTC
genomic: CGAGCTGTAACTGTACTCAGGGCATGGTTGTTTGAACACTTCCTTCACCCgtgagtaatt ... tgtgtttcagTTATCCTACTGATACAGACAAGCTAATGTTGGCTAAGCAGACTGGTCTCTC
EST: gi|110689896|gb|EE066519.1|EE066519
EST:     CGAGCTGTAACTGTACTCAGGGCATGGTTGTTTGAACACTTCCTTCACCC                         TTATCCTACTGATACAGACNAGCTAATGTTGGCTAAGCAGACTGGTCTCTC
genomic: CGAGCTGTAACTGTACTCAGGGCATGGTTGTTTGAACACTTCCTTCACCCgtgagtaatt ... tgtgtttcagTTATCCTACTGATACAGACAAGCTAATGTTGGCTAAGCAGACTGGTCTCTC