1 5' 3' | 2 5' 3' | 3 5' 3' |
GAGTCTGAGTGGAACTGGAATTGTTGATGATCCGCTCAGTTGTGGAGATGGGGGGGAGCACCGGAGAAAAAAGTCGAGGCTAATTTCGATGCTAGACGAGgtatgactctaattcgacgccatcctttcttcatttgcactttagctaaatgggatttcttcgacgttgagttttgagttatgagttttaccttcaaaac...
species | Vitis vinifera |
transcript | Vv08s0007g01290.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: NNNNNNAGCACCGGAGAAAAAAGTCGAGGCTAATTTCGATGCTAGACGAG GTTTACAGGAGGTACAAGCACTACTATCAACAAATGCAGGCAGTTGTAGCAEST: gi|110699383|gb|EE076333.1|EE076333
genomic: GGGGGGAGCACCGGAGAAAAAAGTCGAGGCTAATTTCGATGCTAGACGAGgtatgactct ... tcaatattagGTTTACAGGAGGTACAAGCACTACTATCAACAAATGCAGGCAGTTGTAGCA
EST: NNNNNNAGCACCGGAGAAAAAAGTCGAGGCTAATTTCGATGCTAGACGAG GTTTACAGGAGGTACAAGCACTACTATCAACAAATGCAGGCAGTTGTAGCAEST: gi|110689896|gb|EE066519.1|EE066519
genomic: GGGGGGAGCACCGGAGAAAAAAGTCGAGGCTAATTTCGATGCTAGACGAGgtatgactct ... tcaatattagGTTTACAGGAGGTACAAGCACTACTATCAACAAATGCAGGCAGTTGTAGCA
EST: NNNNNNAGCACCGGAGAAAAAAGTCGAGGCTAATTTCGATGCTAGACGAG GTTTACAGGAGGTACAAGCACTACTATCAACAAATGCAGGCAGTTGTAGCA
genomic: GGGGGGAGCACCGGAGAAAAAAGTCGAGGCTAATTTCGATGCTAGACGAGgtatgactct ... tcaatattagGTTTACAGGAGGTACAAGCACTACTATCAACAAATGCAGGCAGTTGTAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTCTGAGTGGAACTGGAATTGTTGATGATCCGCTCAGTTGTGGAGATGGGGGGGAGCACCGGAGAAAAAAGTCGAGGCTAATTTCGATGCTAGACGAGgtatgactctaattcgacgccatcctttcttcatttgcactttagctaaatgggatttcttcgacgttgagttttgagttatgagttttaccttcaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatggga