Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAGACAAAGgtgagcattatcttcttcatgcaatgcatttttttcatgatgaaatatttaacatcatctgttgggcag

Basic information

species Vitis vinifera
transcript Vv07s0031g02750.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os12g07190.1 (Oryza sativa), 5'ss of exon 8
ACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAGACAAAGgt-gagcattatct-tcttcatgcaatgcatttttttcatgatgaaatatttaacatca-tctgttgggcag--------------------------
|||  |||||| || |  || || || || || ||||| |||||||| ||||| ||||||||||| || ||||| || ||| |||||||| | ||   |||| |||| ||||   | |   |||    ||        || |  ||  || |      | | | ||                                
ACTGTAAACCCAGATTTTGCTACATTAGACACGACAATTCTTGATGCTCTACATATAATGCATGATGGAAAGTTCTTGCATATTCCTGTTCTTGATCGAGgtagagccttattcatgtctctgcgtcccaaaaggacaataacaaagcatcttctgggactttattatttgatgcttgtcttacattttcctcaacag

upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G052277_T01 (Zea mays), 5'ss of exon 8
ACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAGACAAAGgtgagcattatcttcttca-tgcaatgcatttttttcatgatgaaatatttaacatcatctgt---tgggcag
||| || ||||||| || || || ||||| ||||||||||||||||| ||||| || |||||||| || || || || ||| |||||||| | ||   |||| | | ||   |  | ||    || |     ||      ||    ||| | |  |    | |   ||  |||
ACTGCACACCCTGACTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTGATGGAGgtaaactttgattcttccagcctaaggttgccttacttctattgtgtatctgatgtttcttttccatgaacag

upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G177485_T01 (Zea mays), 5'ss of exon 3
ACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAGACAAAGgtgagcattatcttcttcatgcaatgcatttttttcatgatg--------aaatatttaacatcatct---gttgggcag
||| || |||| || || || || ||||| ||||||||||||||||| ||||| || |||||||| || || || || ||| |||||||| | ||   |||| | | ||   |  |  |  | | |  |   |    |||||           ||| | |  |    |    |||  |||
ACTGCACACCCCGATTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTGATGGAGgtaaactttgattcttctagcctaaggttgcctgctttgatgcttccattgtgtatctgattttccttttccttgaacag

upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G031609_T02 (Zea mays), 5'ss of exon 8
ACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAGACAAAGgtgagcattatcttcttcatgcaatgcatttttttcatgatg--------aaatatttaacatcatct---gttgggcag
||| || |||| || || || || ||||| ||||||||||||||||| ||||| || |||||||| || || || || ||| |||||||| | ||   |||| | | ||   |  |  |  | | |  |   |    |||||           ||| | |  |    |    |||  |||
ACTGCACACCCCGACTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTGATGGAGgtaaactttgattcttctagcctaaggttgcctgctttgatgcttccattgtgtatctgattttccttttccttgaacag

upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G131118_T01 (Zea mays), 5'ss of exon 6
ACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAGACAAAGgtgagcattatcttcttcatgcaatgcatttttttcatgatg--------aaatatttaacatcatct---gttgggcag--------------------
||| || |||| || || || || ||||| ||||||||||||||||| ||||| || |||||||| || || || || ||| |||||||| | ||   |||| | | ||   |  |  |  | | |  |   |    |||||           ||| | |  |    |    |||  |||                    
ACTGCACACCCCGACTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTGATGGAGgtaaactttgattcttctagcctaaggttgcctgctttgatgcttccattgtgtatctgattttccttttccttgaacagatgggcaggttgctgcttgc

upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA04G38480.1 (Glycine max), 5'ss of exon 8
ACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAGACAAAGgtgagcattatcttcttcatgcaatgcatttttttcatgatgaaatattta-----acatcatctgttgggcag------
|||||||||||  |||| ||| |  | ||||||||||| |||||||| || || || |||||| | |||||||| |||||||||||||| || |||| |||| ||| ||   |||||     | ||| |   | |     | | |||||||     |    || ||||  |||       
ACTCCAAACCCACAATGTGCATCTCTAGAGACAACAATTCTTGATGCACTGCATATGATGCATAATGGGAAGTTCTTACATCTTCCTGTGGTGGACAGAGgttagctttgctttcttacctaattgcctgcctatgtactttacatatttatgctgaatatatttgttttgcacttgcag

upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G32930.1 (Glycine max), 5'ss of exon 8
ACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAGACAAAGgtgagcattatcttcttcatgcaatgcatt-tttttcatgatgaaatatttaacatcatctgttgggcag---------------------
||||||||||| || || ||| |  | || ||||| || || ||| | || || || |||||||| ||||| || |||||||||||||| ||||||||||||||   |||| ||    ||           | |   | |    |   |||   |    ||  || |                        
ACTCCAAACCCAGATTGTGCATCAGTAGATACAACGATACTGGATTCTCTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgtgacatttatttttccaattttgcaggcagtctcctaagtcttatctttttgtactgactactgagtgctgacttttattgtttatgcag

upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 8
ACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAGACAAAGgtgagcattatcttcttcatgcaat--gcatttttttcatgatgaaatatttaacatcatctgttgggcag---------------------
||||||||||| || || ||| |  | || ||||| || || ||||| || || || |||||||| ||||| || |||||||||||||| |||||||||||| |   |||  ||    ||    |  ||| | |  | ||  | | || |||   |    ||  || |                        
ACTCCAAACCCAGATTGTGCATCAATAGATACAACGATACTGGATGCACTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgtaacatttacttttccaattttgtaggcagtctcctaattcttatatttttg-tactgactactgagtgctgacttttattgtttatgcag

upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA06G16570.1 (Glycine max), 5'ss of exon 8
ACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAGACAAAGgtgagcattatcttcttcatg--caatgcattttttt-catgatgaaatatttaacatcatctgttgggcag------
|||||||| || ||||| ||| |  | ||||||||||| |||||||| || || || |||||| | |||||||| ||||||||||| || || |||| |||| ||| ||   ||||| |    | ||| |  ||||| |||  |    |  | || || || ||||  |||       
ACTCCAAATCCAGAATGTGCATCTCTAGAGACAACAATTCTTGATGCACTGCATATGATGCATAATGGGAAGTTCTTACATCTTCCCGTGGTGGACAGAGgttagctttgctttcttaactgcctatgtacctttttacatatttg--tgctgaatattatttgttttgcacttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30128840|gb|CB914179.1|CB914179
EST:     ACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAGACAAAG                         ATGGAGGTATTGCTGCCTGTGTTGATGTTCTGCAGATAACTCATGCAGCAA
genomic: ACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAGACAAAGgtgagcatta ... tgttgggcagATGGAGGTATTGCTGCCTGTGTTGATGTTCTGCAGATAACTCATGCAGCAA