Sequence
atgc intronic sequence ATGC exonic sequence...cttgaaacgagagacctaatggatcttatagctctctctttgatcatgcaagttcttgttgtacttagcatgatttcacttgtgttttttccttatctagGTGATGACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os12g07190.1 (Oryza sativa), 3'ss of exon 7
cttgaaacgagagacctaatggatcttatagctctctctttgatcatgcaagttcttgttgtacttagcatgatttcact-tgtgttttttccttatct----agGTGATGACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAG
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gtttctccaccagatttac---attttcttgcctcttccgatgccatctgagct-ttgtttaattgcatatgaactcactgtgttactttcaattatttttgaagGTGATGACTGTAAACCCAGATTTTGCTACATTAGACACGACAATTCTTGATGCTCTACATATAATGCATGATGGAAAGTTCTTGCATATTCCTGTTCTTG
upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G052277_T01 (Zea mays), 3'ss of exon 7
cttgaaacgagagacctaatggatcttatagctctctctttgatcatgcaagttcttgttgtacttagcatgatttcact-tgtgttttt-tccttatctagGTGATGACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAG
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-------------gtttcttgagatttatgattctttacttcaaaa-gttgttgaattttgtatttattttagacacagtgtctgttactgttttgatccagGTAATGACTGCACACCCTGACTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTG
upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G031609_T02 (Zea mays), 3'ss of exon 7
cttgaaacgagagacctaatggatcttatagctctctctttgatcatgcaagttcttgttgtacttagcatgatttcact-tgtgttttttccttatctagGTGATGACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAG
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---------gtttctcctgcagatttatgatttgtattccaaaagatgttgaattttgt---attcatcctagacacacagtgtctactattttgatccagGTAATGACTGCACACCCCGACTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTG
upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G131118_T01 (Zea mays), 3'ss of exon 5
cttgaaacgagagacctaatggatcttatagctctct--ctttgatcatgcaagttcttg----ttgtacttagcatgatttcacttgtgttttttccttatctagGTGATGACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAG
| | | || | | | ||| || ||||| ||| ||||| | | | | || |||| | | | | ||| |||| |||||| || |||| || || || || ||||| ||||||||||||||||| ||||| || |||||||| || || || || ||| |||||||| | |
------------------gtttcttctgcagatttatgatttttattccataagttgttgaattttgtattcatcctagacaca-ttgtctactattttgatccagGTAATGACTGCACACCCCGACTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTG
upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G177485_T01 (Zea mays), 3'ss of exon 2
cttgaaacgagagacctaatggatcttatagctctct--ctttgatcatgcaagttcttg----ttgtacttagcatgatttcacttgtgttttttccttatctagGTGATGACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAG
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------------------gtttcttctgcagatttatgatttttattccataagttgttgaattttgtattcatcctagacacaat-gtctactattttcatccagGTAATGACTGCACACCCCGATTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTG
upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA04G38480.1 (Glycine max), 3'ss of exon 7
----------------------------cttgaaacgaga--gacctaatggatcttatagctctctcttt--gatcatgcaagttcttgtt--gtacttagcatga-------tttcacttgtgttttttccttatct-----------agGTGATGACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAG
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gtggctatgattttattttgtgaagtaaccatacaggaaattggtttattctgtgatgtcttttcttcttccggcttgtgcttattttttctaggtattcagaattaatttgactttcttctttattcttcccttcacttattttttgttagGTGATGACTCCAAACCCACAATGTGCATCTCTAGAGACAACAATTCTTGATGCACTGCATATGATGCATAATGGGAAGTTCTTACATCTTCCTGTGGTGG
upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G16570.2 (Glycine max), 3'ss of exon 7
--------------------------------------------cttgaaacgagagacctaatggatcttatagctc-------tctctttgatcatgca-agttcttgttgtacttagcatgatttcacttgtgttttttccttatctagGTGATGACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAG
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gtggttatgattttattttgtgaagtaaccatacaggaaattggtttattctgtgatgtttttttcttcttctggctggtgcttatttttttaggtattcagaattaatttgattttcttctttattcttcccttcacttattttttgttagGTGATGACTCCAAATCCAGAATGTGCATCTCTAGAGACAACAATTCTTGATGCACTGCATATGATGCATAATGGGAAGTTCTTACATCTTCCCGTGGTGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30128840|gb|CB914179.1|CB914179EST: CTCCTGAGTTGACTCTGGTGGAAAAG GTGATGACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGAT
genomic: CTCCTGAGTTGACTCTGGTGGAAAAGgttgttgttg ... ccttatctagGTGATGACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgcaagttcttgttgtacttagcatgatttcacttgtgttttttccttatctagGTGATGACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAG
tttcacttgtgttttt CT-rich tract
tgtttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttgaaacgagagacctaatggatcttatagctctctctttgatcatgcaagttcttgttgtacttagcatgatttcacttgtgttttttccttatctagGTGATGACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAG
- -gaaacga
- - - - - - - cctaatg
- - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacttgt