Sequence
atgc intronic sequence ATGC exonic sequenceGTATAAATTTGATGATGAAAGGGTGACAAAAGAAGACGTGAAGAGGGCTTTGGAGGAGCAATATGGTGGTGAAGAAGAGgtaatgttttcttgagtttagctcataatttttgagtctatttgttattcttcacttgcatgttctttcgaactcatgctttttcctactttgcctgttaatgattaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os01g56490.1 (Oryza sativa), 5'ss of exon 12
GTATAAATTTGATGATGAAAGGGTGACAAAAGAAGACGTGAAGAGGGCTTTGGAGGAGCAATATGGTGGTGAAGAAGAGgtaatgttttcttgagtttagctcataatttttgagtctatttgttattcttcacttgcatgttctttcgaactcatgctttttcctactttgcctgttaatgattaacag
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GTACAAGTTTGATGATGAACGAGTGACAAAAGAAGACATGAAGCGGGCATTAGAGGAGCAATACGGTGGCGAGGAAGAGgta---tatacacacatgaacactggaagccccaagtcggcct-------tttacttctattagtttt---attaatgtcttttttttctgttacag--------------
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G071441_T02 (Zea mays), 5'ss of exon 8
GTATAAATTTGATGATGAAAGGGTGACAAAAGAAGACGTGAAGAGGGCTTTGGAGGAGCAATATGGTGGTGAAGAAGAGgtaatgttttcttgagtttagctcataatttttgagtctatttgttattcttcacttgcatgttctttcgaactcatgctttttcctactttgcctgttaatgattaacag
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GTACAAGTTCGAGGATGAACGAGTGACGAAAGAAGACATGAAACGAGCATTGGAGGAACAATATGGTGGTGAAGAAGAGgtaatacatgcagacactaaact------tcttcaattagcttgg-gtacataacatttatctttgttgcag---------------------------------------
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G551402_T02 (Zea mays), 5'ss of exon 6
GTATAAATTTGATGATGAAAGGGTGACAAAAGAAGACGTGAAGAGGGCTTTGGAGGAGCAATATGGTGGTGAAGAAGAGgtaatgttttcttgagtttagctcataatttttgagtctatttgttattcttcacttgcatgttctt-tcgaactcatgctttttcctactttgcctgttaatgattaacag
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GTATAAATTTGATGATGAACGTGTAACAAAAGAAGATGCTAAGAAGGCTCTTGAAGAACAATATGGGGGTGATGAAGAGgtaa-gttctatttgtttt---tttttattcaaggataaattctgtgaagtctacct-catctacttatcaccatcgtctatgtttctcttttggat-taaacag-------
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA20G11330.1 (Glycine max), 5'ss of exon 4
GTATAAATTTGATGATGAAAGGGTGACAAAAGAAGACGTGAAGAGGGCTTTGGAGGAGCAATATGGTGGTGAAGAAGAGgtaat-gttttcttga-gtttagctcataatttttgagtct---atttgttattcttcacttgcatgttctttcgaactcatgctttttcctactttgcctgttaatgattaacag
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GTACAAATTTGATGATGAGAGGGTGACAAAAGAAGATAATAAAAGAGCATTGGAGGAGCAATATGGTGGTGAGGAAGAGgtaattgttttattgccattgaccatgccattttttccttttgaatatgtcttttgatgactgaatcttgtgtttaaacag-----------------------------------
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA14G04890.1 (Glycine max), 5'ss of exon 12
GTATAAATTTGATGATGAAAGGGTGACAAAAGAAGACGTGAAGAGGGCTTTGGAGGAGCAATATGGTGGTGAAGAAGAGgtaat-gttttcttgagtttagctcataatttttgagtctatttgttattcttcacttgcatgttctttcgaactcatgctttttcctactttgcctgttaatgattaacag
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GTATAAATTTGATGATGAGAGGGTGACTAAAGAAGACACTAAACGGGCATTAGAGGAGCAATATGGTGGTGAGGAAGAGgtaattgcttttttgcaattggctg-------tggcatgtatttg--aacatttacttgtcggttattt-aaccacttgtattttaacag----------------------
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA02G43930.1 (Glycine max), 5'ss of exon 12
GTATAAATTTGATGATGAAAGGGTGACAAAAGAAGACGTGAAGAGGGCTTTGGAGGAGCAATATGGTGGTGAAGAAGAGgtaat-gttttcttgagtttagctcataatttttgagtc-tatttgttattcttcacttgcatgttctttcgaactcatgctttttcctactttgcctgttaatgattaacag
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GTATAAATTTGATGATGAGAGGGTGACTAAAGAAGACACTAAACGGGCATTAGAGGAGCAATATGGTGGCGAGGAAGAGgtaattgtttttttgcaattggct-gtggcatttgatccctatatttgaacatttgcttgttggttattt-aaccacttgtattttaacag----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110388155|gb|EC952874.1|EC952874EST: AAGAAGACGTGAAGAGGGCTTTGGAGGAGCAATATGGTGGTGAAGAAGAG CTGCCCCAGACAAATCCTGGATTGAATAACACCCCCTTTAAATTTACGAAG
genomic: AAGAAGACGTGAAGAGGGCTTTGGAGGAGCAATATGGTGGTGAAGAAGAGgtaatgtttt ... tgattaacagCTGCCCCAGACAAATCCTGGATTGAATAACACCCCCTTTAAATTTACGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTATAAATTTGATGATGAAAGGGTGACAAAAGAAGACGTGAAGAGGGCTTTGGAGGAGCAATATGGTGGTGAAGAAGAGgtaatgttttcttgagtttagctcataatttttgagtctatttgttattcttcacttgcatgttctttcgaactcatgctttttcctactttgcctgttaatgattaacag
- - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG