Sequence
atgc intronic sequence ATGC exonic sequenceGCTATGAGTTCCCTCTGCAACTTGATCTTGATCGAGAGAATGGCAAATATTTATCTCCTGATGCCAATAGGACTGTTCGCAACCTTTACGCCCTTCACAGgtattagtaatatcattgtttattgctctctgaagaataatcaccgactgttttttaaggttataacctagctaaaatcatttctatggtggtcaaaagt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 10
GCTATGAGTTCCCTCTGCAACTTGATCTTGATCGAGAGAATGGCAAATATTTATCTCCTGATGCCAATAGGACTGTTCGCAACCTTTACGCCCTTCACAGgta--ttagtaatatcattgtttattgctctctgaagaataatcaccgactgttttttaaggttataacctagctaaaatcatttctatg-gtggtcaaaagt-
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GCTATGAGTTCCCTCTTCAACTTGATCTTGATAGAGACAATGGAAAATATCTATCTCCAGATGCAGATCGAAGTATTAGAAACCTCTATACTCTTCACAGgtaatttatttat-ttatcataaactgttc-caaatctttgaatggtatataggtgaaacagctataatgaaa--aaaatctattccatgtatgtagaaatgtg
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G551402_T02 (Zea mays), 5'ss of exon 4
GCTATGAGTTCCCTCTGCAACTTGATCTTGATCGAGAGAATGGCAAATATTTATCTCCTGATGCCAATAGGACTGTTCGCAACCTTTACGCCCTTCACAGgtattagtaatatcattgtttattgc---tctctgaagaataatcaccgactgttttttaaggttataacctagctaaaatcatttctatggtggtcaaaagt
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GCTATGAGTTCCCTCTGCAACTTGATCTGGATAGAGATGGTGGCAAATACATTGCTCCAAATGCAGATCGAAGTACACGAAACCTTTACACTCTTCACAGgcaatggc--ttttaccacttactgcacatctttcttggctttaaagcgaaccaatttatttactgtccgcgacatgtcctttttttcttgaacaccatgac-
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA14G04890.1 (Glycine max), 5'ss of exon 10
GCTATGAGTTCCCTCTGCAACTTGATCTTGATCGAGAGAATGGCAAATATTTATCTCCTGATGCCAATAGGACTGTTCGCAACCTTTACGCCCTTCACAGgtattagtaatatcattgtttattgctctctgaagaataatcaccgactgttttttaaggtta-taacctagctaaaatcatttctatgg--tggtcaaaagt
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GCTATGAGTTTCCCTTGCAACTTGACCTTGATCGTGAGAATGGAAAATATTTATCACCTGATGCTGATAGGAATGTCCGCAATCTTTACACACTTCATAGgtaat-gtagtggtaatgacggctg-tatttgttgcagactgtatggttttttatttgggctgctcttctagtgatctctcttttcatgacttctttaggag-
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA20G11330.1 (Glycine max), 5'ss of exon 2
GCTATGAGTTCCCTCTGCAACTTGATCTTGATCGAGAGAATGGCAAATATTTATCTCCTGATGCCAATAGGACTGTTCGCAACCTTTACGCCCTTCACAGgtattagtaatatcattgtttattgctctctgaagaataat---caccgactgttttttaaggttataacctagct-aaaatcatttctatggtggtcaaaagt
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GTTATGAGTTTCCCTTACAACTTGATCTTGATCGTGAGGATGGGAAATATCTATCACCTGATGCTGATAGGAGTGTCCGCAATCTTTACACACTTCACAGgtaat-gttatggtagtacctgtagtatttgttagcacagattgcatgggatactttatagtctgtttatttactttacgagcatacata-actggttattt--
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA02G43930.1 (Glycine max), 5'ss of exon 10
GCTATGAGTTCCCTCTGCAACTTGATCTTGATCGAGAGAATGGCAAATATTTATCTCCTGATGCCAATAGGACTGTTCGCAACCTTTACGCCCTTCACAGgtattagtaatatcattgtttattgctctctgaagaataatcaccgactgttttttaaggttataacctagctaaaatca-tttctatgg--tggtcaaaagt
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GTTATGAGTTTCCCTTGCAACTTGACCTTGATCGTGAGAATGGAAAATATTTATCACCTGACGCTGATAGGAATGTCCGCAATCTTTACACACTTCATAGgtaat-gtagtggtagtggcatctg-tatttgttgcagactgtatgattttttatttgggctgctcttctattgatctctcttttcatgacttctttaggag-
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: PP1S42_181V6.1 (Physcomitrella patens), 5'ss of exon 10
GCTATGAGTTCCCTCTGCAACTTGATCTTGATCGAGAGAATGGCAAATATTTATCTCCTGATGCCAATAGGACTGTTCGCAACCTTTACGCCCTTCACAGgtattagt----aatatcattgtttattgctctctgaagaataatcaccgactgttttttaaggttataacctagctaaaatcatttctatggtggtcaaaagt
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GCTATGAGTTTCCTCTGCAACTAGACCTGGATAGAGAGAATGGAAAATATCTCTCTCCTGATGCTGACCGCAGTGTGCGAAATTTATACACATTGCACAGgtgcggggcttgagtttcacctcatgatattttacgcaaggaaagatgtttctgtggattaatgctgatatctttcgtagtttttatctatttt---taaatg-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110388155|gb|EC952874.1|EC952874EST: TTATCTCCTGATGCCAATAGGACTGTTCGCAACCTTTACGCCCTTCACAG TGTTCTAGTTCACAGTGGCGGAGTGCATGGTGGACATTATTATGCCTTTAT
genomic: TTATCTCCTGATGCCAATAGGACTGTTCGCAACCTTTACGCCCTTCACAGgtattagtaa ... ttgtttgtagTGTTCTAGTTCACAGTGGCGGAGTGCATGGTGGACATTATTATGCCTTTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTATGAGTTCCCTCTGCAACTTGATCTTGATCGAGAGAATGGCAAATATTTATCTCCTGATGCCAATAGGACTGTTCGCAACCTTTACGCCCTTCACAGgtattagtaatatcattgtttattgctctctgaagaataatcaccgactgttttttaaggttataacctagctaaaatcatttctatggtggtcaaaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctaaaa