Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGCTTTGAGGGAAGCTTACAAGAAGAAGAAGTTCCTGCCTCTGGATTTGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttctatactctcaagcattttctgtttctgttattgaatgactagcgttcacatttcatccatgtatgtttgagcaatgattaggttactaatg...

Basic information

species Vitis vinifera
transcript Vv06s0004g04020.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g04020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G38480.1 (Glycine max), 5'ss of exon 3
GGCTGCTTTGAGGGAAGCTTACAAGAAGAAGAAGTTCCTGCCTCTGGATTTGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcact-----tctatactctcaagcattttctgtttctgttattgaatgactagc-gttcacatttcatccatgtatgt-ttgagcaatgattaggttactaatg
|||||| |||||||| || |||||||| ||||||| | ||||||| ||| | ||  ||||||||||||| |||||  | |   | ||||||||||| |||||    |     ||  || | ||     | || |  |||| |  |||| ||| || | | |    |||  |  |  ||||  ||||       | |  ||       
GGCTGCGTTGAGGGATGCCTACAAGAATAAGAAGTACTTGCCTCTCGATCTCCGCCCTAAGAAGACCAGGGCTATTCGCAGGAGGCTTACTAAGCACCAGgtattgttgttatcattattgtcgctactgttattcttctttatttgagtgattatctgatttagttttgtgta-atatgccttgaatgtgtgtcatcttt------

upper sequence: Vv06s0004g04020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ36169 (Selaginella moellendorffii), 5'ss of exon 2
GGCTGCTTTGAGGGAAGCTTACAAGAAGAAGAAGTTCCTGCCTCTGGATTTGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcact-tctatactctcaagcattttctgtttctgttattgaatgactagcgttcacatttcatccatgtatgtttgagcaatgattaggttactaatg
|||     |||| || || |||||||| ||||||| | ||||||||||| | ||| | ||||||||| |||| ||||||  |||| | || |||||||||||  ||  | || | |||  ||    |      |||   | |   |  || | |||  | |  ||                                    
GGCCAAGCTGAGAGAGGCGTACAAGAACAAGAAGTACATGCCTCTGGATCTTCGTCCAAAGAAGACCCGAGCGATCAGGCGACGCTTGACAAAGCATCAGgtaaacaatttagaatctagaggtggtggaagctctaaaactttctcgcttgtgttt-cttcgcag-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77582082|gb|DV219992.1|DV219992
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110425325|gb|EC991709.1|EC991709
EST:     TGCGTCCTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|34320321|gb|CF373075.1|CF373075
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110415159|gb|EC981036.1|EC981036
EST:     TGCGTCCTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110702387|gb|EE081039.1|EE081039
EST:     TGCGTCCTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAA                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|77587627|gb|DV222989.1|DV222989
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|37187679|gb|CF607032.1|CF607032
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110385907|gb|EC950467.1|EC950467
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|77587434|gb|DV222862.1|DV222862
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|71866163|gb|DT015218.1|DT015218
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110709538|gb|EE085096.1|EE085096
EST:     TGCGTCCTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110400689|gb|EC967263.1|EC967263
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|71872376|gb|DT021431.1|DT021431
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|18458635|gb|BM436913.1|BM436913
EST:     TGCGTCCTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|30129424|gb|CB914763.1|CB914763
EST:     TGCGTCCTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110715141|gb|EE092854.1|EE092854
EST:     TGCGTCCTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110417031|gb|EC983052.1|EC983052
EST:     TGCGTCCTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110411436|gb|EC977149.1|EC977149
EST:     TGCGTCCTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110379354|gb|EC944541.1|EC944541
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110424241|gb|EC990597.1|EC990597
EST:     TGCGTCCTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110416845|gb|EC982851.1|EC982851
EST:     TGCGTCCTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110702424|gb|EE081124.1|EE081124
EST:     TGCGTCCTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110389831|gb|EC954702.1|EC954702
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|37188865|gb|CF608214.1|CF608214
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|71865913|gb|DT014968.1|DT014968
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110700515|gb|EE078639.1|EE078639
EST:     TGCGTCCTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|34415997|gb|CF414751.1|CF414751
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|71872195|gb|DT021250.1|DT021250
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110703963|gb|EE081358.1|EE081358
EST:     TGCGTCCTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110692515|gb|EE071849.1|EE071849
EST:     TGCGTCCTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|30320471|gb|CD003733.1|CD003733
EST:     TGCGTCCTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|34319337|gb|CF372091.1|CF372091
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|34320531|gb|CF373285.1|CF373285
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110413182|gb|EC978959.1|EC978959
EST:     TGCGTCCTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|30125232|gb|CB910571.1|CB910571
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110690273|gb|EE067226.1|EE067226
EST:     TGCGTCCTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110381127|gb|EC946445.1|EC946445
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110725977|gb|EE102998.1|EE102998
EST:     TGCGTCCTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110387243|gb|EC951897.1|EC951897
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110364945|gb|EC928567.1|EC928567
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
EST: gi|110367672|gb|EC931618.1|EC931618
EST:     TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAG                         GCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG
genomic: TGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttct ... aaatatgcagGCATCTTTGAAGACTGAACGAGAGAAAAAGAAGGAGATGTATTATCCCATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCTGCTTTGAGGGAAGCTTACAAGAAGAAGAAGTTCCTGCCTCTGGATTTGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGgtgcacttctatactctcaagcattttctgtttctgttattgaatgactagcgttcacatttcatccatgtatgtttgagcaatgattaggttactaatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT