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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgggttttctttgaaactaatgatagagtgattgggtctgaaaatacaaatatgctattacggtgattgattttaatgctgttttctgtgtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAAGCAGAAGGCTGCTTTGAGGGAAGCTTACAAGAAGAAGAAGTTCCTGCCT

Basic information

species Vitis vinifera
transcript Vv06s0004g04020.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g04020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os04g30730.1 (Oryza sativa), 3'ss of exon 2
ttgggttttctttgaaactaatgatagagtgattgggtctgaaaatacaaatatgctattacggtgattgattttaatgctgttttctgtgtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAAGCAGAAGGCTGCTTTGAGGGAAGCTTACAAGAAGAAGAAGTTCCTGCCT
 || |  | |||     ||  |  |     | | |  | ||    |     |     ||  || | |  | || |   | || |   | | |    |||| ||||||||| |    ||||| ||||  ||| |||| ||||| || |||||||||||||| ||  ||||||| || |||||||||||||   | || || 
gtgcgcctccttc----ctccttctctctcgctcg--tttgttggtgtggctgg---atctcgctcacgggttcttggggtggtgaattttttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAAGCAGAAGGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCG

upper sequence: Vv06s0004g04020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G38480.1 (Glycine max), 3'ss of exon 2
ttgggttttctttgaaactaatgatagagtgattgggtctgaaaatacaaatatgctattacggtgattgattttaatgctgttttctgtgtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAAGCAGAAGGCTGCTTTGAGGGAAGCTTACAAGAAGAAGAAGTTCCTGCCT
    ||  |     || ||||  | |   |  || | | ||   ||  |  | |  | |     | | | ||||| |   ||        | |  |||||||||||||||||| ||   ||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||| || |||||||| ||||||| | |||||
----gtaataacctaatctaaataaatttttgtttgttttgcctatg-aggtgt-ttgtgttaattacttattttgaaattg--------gggtttgcagAAAGGTGGTGAGGTTGAACATTGCCCAGGTTTTGACGGTGATTTCTCAGAAGCAGAAGGCTGCGTTGAGGGATGCCTACAAGAATAAGAAGTACTTGCCT

upper sequence: Vv06s0004g04020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G43770.1 (Glycine max), 3'ss of exon 2
ttgggttttctttgaaactaatgatagagtgattgggtctgaaaatacaaatatgctattacggtgattgattttaatgctgttttctgtgtggg---tgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAAGCAGAAGGCTGCTTTGAGGGAAGCTTACAAGAAGAAGAAGTTCCTGCCT
                | ||||  ||   | ||     ||     | |   | |||  ||  |||   || || |  || | ||||     || |   ||||| |||||||||||| ||   ||||| ||||| ||||| |||||||| |||||||||||||| || |||||||| || |||||||| ||||||| | |||||
--------------gtaataatcttaatctaataattcctcgt--ttctcttttgcctttgaggtttgtgtttatg-tgttattttgaaattgaggtttgcagCAAGGTGGTGAGGTTGAACATTGCCCAGGTTTTGACGGTGATTTCTCAGAAGCAGAAGGCCGCGTTGAGGGATGCCTACAAGAACAAGAAGTACTTGCCT

upper sequence: Vv06s0004g04020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G39390.1 (Arabidopsis thaliana), 3'ss of exon 2
ttgggttttctttgaaactaatgatagagtgattgggtc-tgaaaatacaaatatgctattacggtgat-tgattttaatgctgttttctgtgtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAAGCAGAAGGCTGCTTTGAGGGAAGCTTACAAGAAGAAGAAGTTCCTGCCT
    ||    |       || | |||      |||| |  |      ||   | |   || ||  |||| | |  |   |  |||||| ||| ||  | ||| ||||||||||||  ||||||||| ||||||||||||||||| || ||||| || ||| |||||||||| || || |||||||| |||||| |  |||||
-aaagtagcttacttgcttagttatatcactgttggattgttcggtcactggtttttaatcacattgatctcaaatgggttatgttttatgt-tgatttcagCAAGGTGGTGAGGAAGTCGATTGCTCAGGTGTTGACAGTGATCTCACAGAAACAAAAGTCTGCTTTGAGAGAGGCATACAAGAACAAGAAGCTTTTGCCT

upper sequence: Vv06s0004g04020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G55170.1 (Arabidopsis thaliana), 3'ss of exon 2
-----ttgggttttctttgaaactaatgatagagtgattgggtctgaaaatacaaatatgctattacggtgattgattttaatgctgt-tttctgtgtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAAGCAGAAGGCTGCTTTGAGGGAAGCTTACAAGAAGAAGAAGTTCCTGCCT
      | | |||| |||   |||  |   |   |   |  | |   ||||     || | ||||| ||    | ||| |  |  | | ||| || || | ||||| || |||||||||  |||||||||||| |||||||| ||||  || ||||| || ||| ||||| | || ||||| ||||| || ||||||||  |||| 
agaccattgtttttgtttaggacttttagcaatcttggtaaggcctcaaat-----taagttattatgg-atctaattgtggtcttttgtttttgggttgttgcagCAAAGTGGTGAGGAAGTCGATTGCGCAAGTGTTGACTGTGAGCTCACAGAAACAAAAGTCTGCTCTTAGAGAAGCATACAAAAACAAGAAGTTGTTGCCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77582082|gb|DV219992.1|DV219992
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110425325|gb|EC991709.1|EC991709
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|34320321|gb|CF373075.1|CF373075
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110415159|gb|EC981036.1|EC981036
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110702387|gb|EE081039.1|EE081039
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|77587627|gb|DV222989.1|DV222989
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|37187679|gb|CF607032.1|CF607032
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110385907|gb|EC950467.1|EC950467
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|77587434|gb|DV222862.1|DV222862
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|71866163|gb|DT015218.1|DT015218
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110709538|gb|EE085096.1|EE085096
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110400689|gb|EC967263.1|EC967263
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|71872376|gb|DT021431.1|DT021431
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|18458635|gb|BM436913.1|BM436913
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110715141|gb|EE092854.1|EE092854
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110417031|gb|EC983052.1|EC983052
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110411436|gb|EC977149.1|EC977149
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110379354|gb|EC944541.1|EC944541
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110424241|gb|EC990597.1|EC990597
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTTTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110416845|gb|EC982851.1|EC982851
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110702424|gb|EE081124.1|EE081124
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110389831|gb|EC954702.1|EC954702
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|37188865|gb|CF608214.1|CF608214
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|71865913|gb|DT014968.1|DT014968
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110700515|gb|EE078639.1|EE078639
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|34415997|gb|CF414751.1|CF414751
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|71872195|gb|DT021250.1|DT021250
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110703963|gb|EE081358.1|EE081358
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110692515|gb|EE071849.1|EE071849
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|30320471|gb|CD003733.1|CD003733
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|34319337|gb|CF372091.1|CF372091
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|34320531|gb|CF373285.1|CF373285
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110413182|gb|EC978959.1|EC978959
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110690273|gb|EE067226.1|EE067226
EST:     GTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: GTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110381127|gb|EC946445.1|EC946445
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110725977|gb|EE102998.1|EE102998
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110387243|gb|EC951897.1|EC951897
EST:     TTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTTTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110364945|gb|EC928567.1|EC928567
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
EST: gi|110367672|gb|EC931618.1|EC931618
EST:     CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGAT                         AAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA
genomic: CTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATgtactacttt ... gtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaaatatgctattacggtgattgattttaatgctgttttctgtgtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAAGCAGAAGGCTGCTTTGAGGGAAGCTTACAAGAAGAAGAAGTTCCTGCCT
                          ttttaat  putative branch site (score: 3)
                   tgattgattttaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgggttttctttgaaactaatgatagagtgattgggtctgaaaatacaaatatgctattacggtgattgattttaatgctgttttctgtgtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAAGCAGAAGGCTGCTTTGAGGGAAGCTTACAAGAAGAAGAAGTTCCTGCCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - aaactaa
- - - - - - - - - - - - - - -tgattgg
- - - - - - - - - - - - - - - - - - - - gaaaata
- - - - - - - - - - - - - - - - - - - - - - - -caaatat