Sequence
atgc intronic sequence ATGC exonic sequence...aaatgctgtcaagattggatgctatttttcatttttcttttgtttttttcttttatttttgtcatgatgaaaatgcaatgcccttttctttttttgtcagTTGTATGGCCGATACCCAAATTTACATGTCTATTCCTATGGGACCCTTCCATGTGTGGATTCAGTTGTAGCAGATGCATGTTCAGAATTTGTCACAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0124g00200.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G39210.1 (Glycine max), 3'ss of exon 9
aaatgctgtcaagattggatgctatttttcatttttcttt--tgtttttttctttta--tttttgtcatgatgaaaatgcaatgcccttttctttttttgtcagTTGTATGGCCGATACCCAAATTTACATGTCTATTCCTATGGGACCCTTCCATGTGTGGATTCAGTTGTAGCAGATGCATGTTCAGAATTTGTCACAAG
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-cttttcgtccattttc-atgtttttttttttcgttctttcatgctgcagtcttttaagcatttgatttgatttttaaataaattgctgagcttttcca--cagCTTTATAACCGCTACCCTAATCTGCATGTTTACTCATATGGGCCACTCCCATGTCTGGATTTAGTTGTGGCAAATGCATGTTCAGAATTTGTTACAAG
upper sequence: Vv05s0124g00200.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G44440.1 (Glycine max), 3'ss of exon 8
aaatgctgtcaagattggatgctatttttcatttttcttttgtttttttctttta--tttttgtcatgatgaaaatgcaatgcccttttctttttttgtcagTTGTATGGCCGATACCCAAATTTACATGTCTATTCCTATGGGACCCTTCCATGTGTGGATTCAGTTGTAGCAGATGCATGTTCAGAATTTGTCACAAG
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aagaacttttcattcattttcatgtcttttctttctttcatgctgtagtcttttaagcatttgatttgatttttaaataaattgctgagcttttcca--cagCTTTATAACCGCTACCCTAATCTTCATGTTTACTCATATGGGCCACTCCCATGTCTGGATTTAGTTGTGGCAAATGCATGTTCAGAATTTGTTACAAG
upper sequence: Vv05s0124g00200.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G05790.1 (Arabidopsis thaliana), 3'ss of exon 10
aaatgctgtcaagattggatgctatttttcatttttcttttgtttttttcttttatttttgtcatgatgaaaatgcaatgcccttttctttttttgtcagTTGTATGGCCGATACCCAAATTTACATGTCTATTCCTATGGGACCCTTCCATGTGTGGATTCAGTTGTAGCAGATGCATGTTCAGAATTTGTCACAAG
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------------------gtac-gtttttaattaataaaaggttacatgcctttctttaacatatctttcgtttctgagttcttttctttttgcgggtagCTTCGTTGCAGATTCCCTAACCTATATGTATATGCCTATGGACCTCTCCCATGTGTAGATTCGGATGTGGCAGAGGCATGTTCAGAATTTGTTACAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttcttttatttttgtcatgatgaaaatgcaatgcccttttctttttttgtcagTTGTATGGCCGATACCCAAATTTACATGTCTATTCCTATGGGACCCTTCCATGTGTGGATTCAGTTGTAGCAGATGCATGTTCAGAATTTGTCACAAG
tgcccttttctttttt CT-rich tract
ttttatttttgtcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaatgctgtcaagattggatgctatttttcatttttcttttgtttttttcttttatttttgtcatgatgaaaatgcaatgcccttttctttttttgtcagTTGTATGGCCGATACCCAAATTTACATGTCTATTCCTATGGGACCCTTCCATGTGTGGATTCAGTTGTAGCAGATGCATGTTCAGAATTTGTCACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - -ctgtcaa
- - - - - - - - ggatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgcc