Sequence
atgc intronic sequence ATGC exonic sequence...ttggatgaattcattaattgttttatgcctctagttggagtggctctgggattctcccaaaaagtgacactggtttttttgttttccttgtttacagtagCAATCAAATTCATCCTAATGTGAGACAAAGTGTGATCTCCTCTTTCCCACACTATGGCCATTCAGGCATAGTTGAGGCTGCACGGGATCTTTTCAATCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0124g00200.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G39210.1 (Glycine max), 3'ss of exon 7
ttggatgaattcattaattgttttatgcctctagttggagtggctctgggattctcccaaaaagtgacactggtttttt-------tgtttt----ccttgtttacagtagCAATCAAATTCATCCTAATGTGAGACAAAGTGTGATCTCCTCTTTCCCACACTATGGCCATTCAGGCATAGTTGAGGCTGCACGGGATCTTTTCAATCAA
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--------atgtgtaattatttatatgaaccaaactgtattgctcctttatatgttccaacacaatattctggttcctcgcgtcaatattttatgttctggtttgcagTTGCAACTACATTCATTCTAATATAAAGAAAAATGTGACTTCATCATTCCCCCACTATGGGCATTCAGGCATAGTTGAGGCTGCACGAGAGCTTTTTATG---
upper sequence: Vv05s0124g00200.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G44440.1 (Glycine max), 3'ss of exon 6
ttggatgaattcattaattgttt-tatgcctctagttggagtggctctgggattctcccaaaaagtgacactggttttt-----------ttgttttccttgtttacagtagCAATCAAATTCATCCTAATGTGAGACAAAGTGTGATCTCCTCTTTCCCACACTATGGCCATTCAGGCATAGTTGAGGCTGCACGGGATCTTTTCAATCAA
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--------atgtgt-aattgtttataagagcccaactgtatagctcctttacatgttccaacacaatattctggtccctcacttcaatattttttgttctggtttgcagTTGCAACTACATTCATTCTAATATAAAGAAAAATGTGACTTCGCCATTCCCCCACTATGGGCATTCAGGCATAGTTGAGGCTGCACGAGAGCTTTTTATG--- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgggattctcccaaaaagtgacactggtttttttgttttccttgtttacagtagCAATCAAATTCATCCTAATGTGAGACAAAGTGTGATCTCCTCTTTCCCACACTATGGCCATTCAGGCATAGTTGAGGCTGCACGGGATCTTTTCAATCAA
tttttttgttttcctt CT-rich tract
tttttttgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttggatgaattcattaattgttttatgcctctagttggagtggctctgggattctcccaaaaagtgacactggtttttttgttttccttgtttacagtagCAATCAAATTCATCCTAATGTGAGACAAAGTGTGATCTCCTCTTTCCCACACTATGGCCATTCAGGCATAGTTGAGGCTGCACGGGATCTTTTCAATCAA
-tggatga
- - - - - - - - - - - - -tgcctct
- - - - - - - - - - - - - - - - - - - - - - - - - -ttctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacactg