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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCTGTGTCTCATCGTAATGCACAGATgtatgaaacactacctattctgattttccatataatttttgtcctactcaactgtttttaggtcattgatttttttatccaatctgctacttttgacatctgtttgcttgtttcaaatattatattttaatcttatgacattctgattttcag

Basic information

species Vitis vinifera
transcript Vv05s0094g01560.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g66520.1 (Oryza sativa), 5'ss of exon 8
ATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCTGTGTCTCATCGTAATGCACAGATgtatgaaacactacctattctgattttccatataatttttgtcctactcaactgtttttaggtcattgatttttttatccaatctgctacttttgacatctgtttgcttgtttcaaatattatattttaatcttatgacattctgattttcag
|| |||||||||||||| || || |||||||| ||||| || |||||||||||    ||||| ||||| ||||||||||  |||     ||||||  |  |  | | ||    |  | |  |   |  | || | |   || | ||||  |                                                                            
ATTGATGATGATGAGAAAGTTACAATGATTGACTTCCCGCAGATGGTATCTGTTAAACATCGGAATGCCCAGATgtatgtgaca-----tattctagtagttaagagaaagactacctttgtattcattattcatgagttttacttttgcag---------------------------------------------------------------------------

upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G472991_T02 (Zea mays), 5'ss of exon 10
ATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCTGTGTCTCATCGTAATGCACAGATgtatgaaacactacctattctgattttccatataatttttgtcctactcaactgtttttaggtcattgatttttttatccaatctgctacttttgacatctgtttgcttgtttcaaatattatattttaatcttatgacattctgattttcag
|| ||||||||||| ||  | ||  | |||||||| || || ||||||||||| |||||||||||||| || ||||||| | |      || || |||     ||   |  || ||| || |      |||| | || |  ||||||| | |   |                                                                       
ATTGATGATGATGAAAAAATTACGGTTATTGATTTTCCACAGATGGTATCTGTTTCTCATCGTAATGCCCAAATgtatgtagc-----ttactcagatcacttatgcgacatt-gtcttatt------ttttaaagtaacggatttttcttttgcag----------------------------------------------------------------------

upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G472991_T04 (Zea mays), 5'ss of exon 10
ATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCTGTGTCTCATCGTAATGCACAGATgtatgaaacactacctattctgattttccatataatttttgtcctactcaactgtttttaggtcattgatttttttatccaatctgctacttttgacatctgtttgcttgtttcaaatattatattttaatcttatgacattctgattttcag
                |  | ||  | |||||||| || || ||||||||||| |||||||||||||| || ||||||| | |      || || |||     ||   |  || ||| || |      |||| | || |  ||||||| | |   |                                                                       
----------------AAATTACGGTTATTGATTTTCCACAGATGGTATCTGTTTCTCATCGTAATGCCCAAATgtatgtagc-----ttactcagatcacttatgcgacatt-gtcttatt------ttttaaagtaacggatttttcttttgcag----------------------------------------------------------------------

upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G33320.1 (Glycine max), 5'ss of exon 8
ATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCTGTGTCTCATCGTAATGCACAGATgtatgaaacactacctattctgattttccatataatttttgtcctactcaactgtttttaggtcattgatttttttatccaatctgctacttttgacatctgtttgcttgtttcaaatattatattttaatcttatgacattctgattttcag
|| ||||||||||| ||  | || ||||||||||| || ||||||||||||||||| || |||||||| |||||||| ||  | |  |||  | ||||         ||| ||| || || |   || ||     || ||     ||  || |||  ||  |   || | |||  ||||  ||||                                          
ATTGATGATGATGAAAAAATTACAATGATTGATTTTCCACAAATGGTATCTGTGTCACACCGTAATGCGCAGATgtaagagtctcctccttgtatgat---------aatctttctcataattttcttttgacttgttatcacaattcctagccatgcttgtcacttcgtcat--gttttgttgt------------------------------------------

upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G04910.1 (Glycine max), 5'ss of exon 8
ATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCTGTGTCTCATCGTAATGCACAGATgtatgaaacactacctattctgattttccatataatttttgtcctactcaactgtttttaggtcattgatttttttatccaatctgctacttttg-acatctgtttgcttgtttcaaatattatattttaatcttatgacattctgattttcag
 |  |||||||||| ||  | || ||||||||||| || ||||||||||||||||| || |||||||| |||||||| ||  | |  |||  | ||||  ||  | | ||  || || |  | |  |||| | | |        ||  |   | |  |||  ||||| | || ||  |||| |                                             
-TTAATGATGATGAAAAAATTACAATGATTGATTTTCCACAAATGGTATCTGTGTCACACCGTAATGCGCAGATGtaagattctcctccttgtatgatagtctttctcataattttctt-ttgacttgttatcacga-------ttcctagccaagcctgtcactttggcacttcactttgtt---------------------------------------------

upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G51270.2 (Arabidopsis thaliana), 5'ss of exon 9
ATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCTGTGTCTCATCGTAATGCACAGATgtatgaaacactacctattctgattttccatataatttttgtcctactcaactgtttttaggtcattgatttttttatccaatctgctacttttgacatctgtttgcttgtttcaaatattatattttaatcttatgacattctgattttcag
|| |||||||| |||||  |||| ||||||||||| || |||||||||||||| || || || |||||||| |||||||  ||    | | |    |   | | |      ||| | | |     || |    |  |  ||| ||| || ||  | | ||   ||                                                              
ATTGATGATGAAGAGAAAATAACGATGATTGATTTTCCACAAATGGTATCTGTTTCACACCGAAATGCACAAATgtatgtgacctctcatctctgcaccatgcctcagtactttcttccaaatttctataaa-atattcttggtttgttaatgaattttgtctctcag-----------------------------------------------------------