Sequence
atgc intronic sequence ATGC exonic sequence...tttgacacttaaaaagttcttagcgttacttcactggtttattttatttaattcaactaatgaatgaataaatttgattttgaatttctttttactgcagATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCTGTGTCTCATCGTAATGCACAGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os01g66520.1 (Oryza sativa), 3'ss of exon 7
-------------------------------------------------------tttgacacttaaaaagttcttagcgttacttcactggtttattttatttaattcaactaatgaatga-------ataaatttgattt-tgaatttctttttactgcagATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCTGTGTCTCATCGTAATGCACAGAT
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gtattgcttcttgtaccttttataagttcacatagaattcactctttggttgcctgcaaacagtcaaacaggtgtcaaggtagaacaatggttgtagttttctagattaaacttctgaataatgtcaccatattttttctttgtgtgtattgatgttttgcagATTGATGATGATGAGAAAGTTACAATGATTGACTTCCCGCAGATGGTATCTGTTAAACATCGGAATGCCCAGAT
upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G472991_T01 (Zea mays), 3'ss of exon 9
------tttgacacttaaaaagttcttagcgttacttcactggtt-tattttatttaattcaactaatgaatgaataaatttgattttgaatttctttttactgcagATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCTGTGTCTCATCGTAATGCACAGAT
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cttaattttgtgatgtagtaa---tacaattcagctacataggtcatagggtaatgttttatgtcagtgtataattaaatttatt----gatgccaatgtcatgcagATTGATGATGATGAAAAAATTACGGTTATTGATTTTCCACAGATGGTATCTGTTTCTCATCGTAATGCCCAAAT
upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G472991_T04 (Zea mays), 3'ss of exon 9
tttgacacttaaaaagttcttagcgttacttcactggtttattttatttaattcaactaatgaatgaataaatttgattttgaatttctttttactgcagATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCTGTGTCTCATCGTAATGCACAGAT
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-------------------------------------------------------------------------------------------------------------------aAAATTACGGTTATTGATTTTCCACAGATGGTATCTGTTTCTCATCGTAATGCCCAAAT
upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G33320.1 (Glycine max), 3'ss of exon 7
-------------------tttgacacttaaaaagttcttagcgttacttcactggtttattttatttaattcaactaatgaatgaataaatttgattttgaatttctttttactgcagATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCTGTGTCTCATCGTAATGCACAGAT
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gtatgctttaacatgccagcataatgattaaaggaattctaaatttaatttcatgaaatcagttattctgtt-ggcttttgcttc--tggttcacacactgaattccattc-attgtagATTGATGATGATGAAAAAATTACAATGATTGATTTTCCACAAATGGTATCTGTGTCACACCGTAATGCGCAGAT
upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G04910.1 (Glycine max), 3'ss of exon 7
-------------------tttgacacttaaaa-agttcttagcgttacttcactggtttattttatttaattcaactaatgaatgaataaatttgattttgaatttctttttactgcagATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCTGTGTCTCATCGTAATGCACAGAT-
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tatgctttaacatgccagcataaatgattaaaggaattctaatttttatttcatgaaatcagttattgtg--ttggcttttgcttc--tagtttacactctgaatt-ctattcattgtagaTTAATGATGATGAAAAAATTACAATGATTGATTTTCCACAAATGGTATCTGTGTCACACCGTAATGCGCAGATG
upper sequence: Vv05s0094g01560.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G51270.2 (Arabidopsis thaliana), 3'ss of exon 8
--------------------------------------------------------------------------------------------tttgacacttaaaaagttcttagcgttacttcactggttt---attttatttaattcaactaatgaatgaataaatttgattttgaatttctttttactgcagATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCTGTGTCTCATCGTAATGCACAGAT
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gtgagatacttagatctatctagttgaattataccttctatttgtaagttactttgctgaaaatatcatgcatttatttgaagctgccttctcatataagttaattaatacttc-tgtaagcatgctagttttgtcctctgcctacttacaattttcattgacacatcctgtttatgtatgcatgtatgttatagATTGATGATGAAGAGAAAATAACGATGATTGATTTTCCACAAATGGTATCTGTTTCACACCGAAATGCACAAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110427485|gb|EC993924.1|EC993924EST: TGGCAGAACATGGCCTTATTCATTGTGACTTCAATGAATTCAACATTATG ATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCT
genomic: TGGCAGAACATGGCCTTATTCATTGTGACTTCAATGAATTCAACATTATGgtatgcattt ... tttactgcagATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttaattcaactaatgaatgaataaatttgattttgaatttctttttactgcagATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCTGTGTCTCATCGTAATGCACAGAT
tttctttttactgc CT-rich tract
taatgaatgaataaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttgacacttaaaaagttcttagcgttacttcactggtttattttatttaattcaactaatgaatgaataaatttgattttgaatttctttttactgcagATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCTGTGTCTCATCGTAATGCACAGAT
-ttgacac
- - - - - aaaaagt
- - - - - - - - - - - - - -acttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - -caactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataaa