1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcaattaatttattattgtttcacttgaatttttctacttcaatcgtctgaaagcagtaaaaagccgatacaaataaaactaactgtatggtgtgtacagGGAACACTCATACCTGCGATAGTTTTGTGGGAAGCCGGACTACAAAAATGGTGCATGAAGCCACCAGGTACATCAGGAAGTGCCTAGGCGGTCGACAAGA
species | Vitis vinifera |
transcript | Vv04s0044g01170.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
gtctgaaagcagtaaaaagccgatacaaataaaactaactgtatggtgtgtacagGGAACACTCATACCTGCGATAGTTTTGTGGGAAGCCGGACTACAAAAATGGTGCATGAAGCCACCAGGTACATCAGGAAGTGCCTAGGCGGTCGACAAGA
aactaac putative branch site (score: 1)
atacaaataaaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaattaatttattattgtttcacttgaatttttctacttcaatcgtctgaaagcagtaaaaagccgatacaaataaaactaactgtatggtgtgtacagGGAACACTCATACCTGCGATAGTTTTGTGGGAAGCCGGACTACAAAAATGGTGCATGAAGCCACCAGGTACATCAGGAAGTGCCTAGGCGGTCGACAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - -cacttga
- - - - - - - - - - - - - - - - - ctacttc
- - - - - - - - - - - - - - - - - - - - - - - - -gaaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtatg