1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTACTAAAGTTATGGCTAGAATGGCCTCAGCTGATATAATGTGTGTTGGCCCCAAGTCTGTGCGAGAAAAATTTACTGGAATAATTAGgtatgtaaatttttatgtatctgtctaatggaaaaaaggatgcaaatctgttatttagttgttgattgttgatttgtgcaatgaattgcagtttaaatga...
species | Vitis vinifera |
transcript | Vv04s0043g00400.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGTGTGTTGGCCCCAAGTCTGTGCGAGAAAAATTTACTGGAATAATTAG GCAACAAGATGTTAGAGCAACAGAAATAGACAAAGTGGATATGCACTCGTCEST: gi|349828307|gb|FQ416260.1|FQ416260
genomic: ATGTGTGTTGGCCCCAAGTCTGTGCGAGAAAAATTTACTGGAATAATTAGgtatgtaaat ... ttattaacagGCAACAAGATGTTAGAGCAACAGAAATAGACAAAGTGGATATGCACTCGTC
EST: ATGTGTGTTGGCCCCAAGTCTGTGCGAGAAAAATTTACTGGAATAATTAG GCAACAAGATGTTAGAGCAACAGAAATAGACAAAGTGGATATGCACTCGTCEST: gi|349821758|gb|FQ408196.1|FQ408196
genomic: ATGTGTGTTGGCCCCAAGTCTGTGCGAGAAAAATTTACTGGAATAATTAGgtatgtaaat ... ttattaacagGCAACAAGATGTTAGAGCAACAGAAATAGACAAAGTGGATATGCACTCGTC
EST: ATGTGTGTTGGCCCCAAGTCTGTGCGAGAAAAATTTACTGGAATAATTAG GCAACGAGATGTTAGAGCAACAGAAATAGACAAAGTGGATATGCACTCGTCEST: gi|349827092|gb|FQ421365.1|FQ421365
genomic: ATGTGTGTTGGCCCCAAGTCTGTGCGAGAAAAATTTACTGGAATAATTAGgtatgtaaat ... ttattaacagGCAACAAGATGTTAGAGCAACAGAAATAGACAAAGTGGATATGCACTCGTC
EST: ATGTGTGTTGGCCCCAAGTCTGTGCGAGAAAAATTTACTGGAATAATTAG GCAACAAGATGTTAGAGCAACAGAAATAGACAAAGTGGATATGCACTCGTCEST: gi|110419251|gb|EC985464.1|EC985464
genomic: ATGTGTGTTGGCCCCAAGTCTGTGCGAGAAAAATTTACTGGAATAATTAGgtatgtaaat ... ttattaacagGCAACAAGATGTTAGAGCAACAGAAATAGACAAAGTGGATATGCACTCGTC
EST: ATGTGTGTTGGCCCCAAGTCTGTGCGAGAAAAATTTACTGGAATAATTAG GCAACAAGATGTTAGAGCAACAGAAATAGACAAAGTGGATATGCACTCGTC
genomic: ATGTGTGTTGGCCCCAAGTCTGTGCGAGAAAAATTTACTGGAATAATTAGgtatgtaaat ... ttattaacagGCAACAAGATGTTAGAGCAACAGAAATAGACAAAGTGGATATGCACTCGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTACTAAAGTTATGGCTAGAATGGCCTCAGCTGATATAATGTGTGTTGGCCCCAAGTCTGTGCGAGAAAAATTTACTGGAATAATTAGgtatgtaaatttttatgtatctgtctaatggaaaaaaggatgcaaatctgttatttagttgttgattgttgatttgtgcaatgaattgcagtttaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaa