Sequence
atgc intronic sequence ATGC exonic sequenceAATGGCTTATGGAAAATTTATTACTTTTGCCATTTCCCAGTCCAATCCAATGTTTCATCTCTCCATTTTGGAAGTGGCGTCACCACAAGCATATGGCCTGgtattgttctatgatactattatatcagcaagataatattttattttaagaatttcatatctgccacaccaccagaaaatttgaagggtgtttggatgca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g04260.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g50860.1 (Oryza sativa), 5'ss of exon 4
AATGGCTTATGGAAAATTTATTACTTTTGCCATTTCCCAGTCCA-ATCCAATGTTTCATCTCTCCATTTTGGAAGTGGCGTCACCACAAGCATATGGCCTGgtattgt-tctatgatactattatatcagcaagataatattttattttaagaatttcatatctgccacaccaccagaa--aatttgaagggt-gtttggatgca--------------
||||| |||||||| | || | ||| | |||| | | || || || |||| || || | | | || ||||||||||| |||||||||||||||||| | | ||||| | | || | | | |||||| ||||| || | | || | | | || ||||| | | | | || |
CATGGCGTATGGAAAGGTCATGAGGTTTAC-ATTTACTGGCCCGGATTCACTGTTCCAAATCCCGTTCCTAGATGTGGCGTCACCTCAAGCATATGGCCTGgtaatatgtctataa-gcaatagttttctcttttgcgtattttcttttagattgatcgaaaatatcaagcaaagaaaactgatttgcatgtttgcttccttttgttctatctttgcag
upper sequence: Vv03s0038g04260.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G00270.1 (Glycine max), 5'ss of exon 4
AATGGCTTATGGAAAATTTATTACTTTTGCCATTTCCCAGTCCAATCCAATGTTTCATCTCTCCATTTTGGAAGTGGCGTCACCACAAGCATATGGCCTGgtattgttctat--gatactattatatcagcaagataatattttattttaagaatttcatatctgccacaccaccagaaaatttgaagggtgtttggatgca
||||||||||||||||| |||| ||| || || | |||| ||||| | || | ||||| | ||||||||||| ||||||||||| |||||||||||| | |||| | | ||||| | || || ||||||| || | ||| | | | | | | || ||
GATGGCTTATGGAAAATTAATTAGTTTGGCTGTTGCTGAGTCTAATCCCACAATTAACCTCTCTGTGTTGGAAGTGGCATCACCACAAGCTTATGGCCTGgtactattctttccattttggctatatggtttttaccattttgtattttatgattggcatggtcagtttttcttctctgagatgggggatcaattatatc--
upper sequence: Vv03s0038g04260.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G35440.1 (Arabidopsis thaliana), 5'ss of exon 3
---AATGGCTTATGGAAAATTTATTACTTTTGCCATTTCCCAGTCCAATCCAATGTTTCATCTCTCCATTTTGGAAGTGGCGTCACCACAAGCATATGGCCTGgtattgttct-atgatactattatatcagcaagataatattttattttaagaatttcatatctgccacaccaccagaaaatttga-agggtgtttggatgca------------------------------------------------------------------------
|||||| |||||||| |||||| |||| | | ||| || || || ||||||| || ||||||||||| || |||||||| ||||| |||||| |||||| ||| | | | ||| | | | | ||| ||| ||| |||| | || | | || | || | || | ||| |
AGGAATGGCCTATGGAAAGTTTATTGGACTTGCTTTGGCTCAG---AACCCTGATTTCAATCTCTCTATCTTGGAAGTGGCATCTCCACAAGCTTATGGTCTGgtactgttcttatgtggtcaatgtttca-----aaattgtcttaatttcagactttcttgattggttacctatcaatactttgaacagaatattttttcgggttaactgagaatggatgctagtttttttgtagcttcattgccaatgatcctgtttgtctcattgtttaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161716824|gb|FC064952.1|FC064952EST: TGTTTCATCTCTCCATTTTGGAAGTGGCGTCACCACAAGCATATGGCCTG GTTGGCATGGCTGCTACTCTTGCAGGAGTGTGTCAAGTGCCTCTCACAGCA
genomic: TGTTTCATCTCTCCATTTTGGAAGTGGCGTCACCACAAGCATATGGCCTGgtattgttct ... caacttgcagGTTGGCATGGCTGCTACTCTTGCAGGAGTGTGTCAAGTGCCTCTCACAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATGGCTTATGGAAAATTTATTACTTTTGCCATTTCCCAGTCCAATCCAATGTTTCATCTCTCCATTTTGGAAGTGGCGTCACCACAAGCATATGGCCTGgtattgttctatgatactattatatcagcaagataatattttattttaagaatttcatatctgccacaccaccagaaaatttgaagggtgtttggatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaat